Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS315H01f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0870 + 6623478-6624257                                           31   0.74 
07_01_1005 + 8509777-8509968,8510059-8510205,8510326-8510544,851...    30   0.98 
03_05_0064 - 20385290-20385346,20385452-20387133,20387266-203880...    28   4.0  
08_01_0352 + 3102552-3105243,3105684-3105748,3105824-3106492           27   9.1  
07_03_0507 - 18871260-18871361,18871444-18871560,18871792-188721...    27   9.1  

>06_01_0870 + 6623478-6624257
          Length = 259

 Score = 30.7 bits (66), Expect = 0.74
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +3

Query: 48  PG*PFARARA-VWSRKSHTFQDPRTLRSAYSAPSPHPRSESARHKRS 185
           P  P ARA A  W+R  H    P +  +A  AP+P  R+E+ R  ++
Sbjct: 109 PSSPRARAAARFWARFFHGEVSPLSRAAAVLAPTPEERAEAVREMKA 155


>07_01_1005 +
           8509777-8509968,8510059-8510205,8510326-8510544,
           8510652-8510761,8511337-8511391,8511447-8511631,
           8512537-8512599,8513713-8513782,8514159-8514242,
           8515925-8516159,8516213-8516517
          Length = 554

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 6/77 (7%)
 Frame = +3

Query: 21  RPGC--HGRHEP-G*PFA-RARAVWSRKSHTFQDPR--TLRSAYSAPSPHPRSESARHKR 182
           RPGC  HG     G   A +A    S  + TF  P   TL   +S PSPHPR+ S+    
Sbjct: 452 RPGCESHGAASSVGASVAGQAPQTASTTALTFSFPASTTLSPWWSPPSPHPRATSSPSTS 511

Query: 183 SACDQGAAYHQRSSSRE 233
             C   A   ++ ++ E
Sbjct: 512 PRCSPRAETARQGAAHE 528


>03_05_0064 -
           20385290-20385346,20385452-20387133,20387266-20388083,
           20388184-20388303,20389036-20389305,20390094-20390269
          Length = 1040

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -3

Query: 300 HRFLNVDCVHNGHRNRMNNRQCLHDWNFSDDRQLLDHRH 184
           H+F   D +H+ H   +N+R C H +   + + L+   H
Sbjct: 73  HQFRGHDLLHS-HGKTLNDRSCSHSFREEETKDLVSSSH 110


>08_01_0352 + 3102552-3105243,3105684-3105748,3105824-3106492
          Length = 1141

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = -3

Query: 192 HRHFFYDGHFLNVGVVMVQ-SMHFV-RYVDPEMCDFSVTKRLWLWQRVSQAHGDRGSQDE 19
           H++ F++G F++    + + S H + R +    C     + LW+   +   +G+R S D 
Sbjct: 98  HKNRFFNGEFMSYFRKLGKTSWHKIARELKDSQCHLQNLRNLWVQYEIQLPNGNRVSTDV 157

Query: 18  ND 13
            D
Sbjct: 158 ED 159


>07_03_0507 -
           18871260-18871361,18871444-18871560,18871792-18872120,
           18872704-18872871,18873592-18873685,18873707-18873766,
           18874702-18874762,18875258-18875319,18875729-18875856,
           18876783-18876852,18877472-18877630
          Length = 449

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
 Frame = -2

Query: 412 CRSCVTTIPMTQLVSEY--TPTNHV 344
           C  C+TTI +TQ  SEY   P  H+
Sbjct: 399 CVICMTTIDLTQRTSEYMVAPCEHI 423


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,835,474
Number of Sequences: 37544
Number of extensions: 267496
Number of successful extensions: 772
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)