Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS315H01f
         (521 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L03426-1|AAA61304.1|  695|Homo sapiens XE7 protein.                    29   7.5  
BC110497-1|AAI10498.1|  695|Homo sapiens splicing factor, argini...    29   7.5  
BC110496-1|AAI10497.1|  695|Homo sapiens splicing factor, argini...    29   7.5  
AL683807-2|CAI41501.1|  695|Homo sapiens chromosome X and Y open...    29   7.5  
AY129010-1|AAM98753.1|  198|Homo sapiens unknown protein.              29   9.9  

>L03426-1|AAA61304.1|  695|Homo sapiens XE7 protein.
          Length = 695

 Score = 29.5 bits (63), Expect = 7.5
 Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
 Frame = +3

Query: 63  ARARAVWSRKSHTFQDPRT--LRSAYSAPSPHPRSESARHKRSACDQGAAYHQRSSSRE 233
           +RAR   SR+    +  R    + AY   SP  RS S  H RS        H+R  SRE
Sbjct: 604 SRARRASSREDGRPRKERRPHKKHAYKDDSPRRRSTSPDHTRSRRSHSKDRHRRERSRE 662


>BC110497-1|AAI10498.1|  695|Homo sapiens splicing factor,
           arginine/serine-rich 17A protein.
          Length = 695

 Score = 29.5 bits (63), Expect = 7.5
 Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
 Frame = +3

Query: 63  ARARAVWSRKSHTFQDPRT--LRSAYSAPSPHPRSESARHKRSACDQGAAYHQRSSSRE 233
           +RAR   SR+    +  R    + AY   SP  RS S  H RS        H+R  SRE
Sbjct: 604 SRARRASSREDGRPRKERRPHKKHAYKDDSPRRRSTSPDHTRSRRSHSKDRHRRERSRE 662


>BC110496-1|AAI10497.1|  695|Homo sapiens splicing factor,
           arginine/serine-rich 17A protein.
          Length = 695

 Score = 29.5 bits (63), Expect = 7.5
 Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
 Frame = +3

Query: 63  ARARAVWSRKSHTFQDPRT--LRSAYSAPSPHPRSESARHKRSACDQGAAYHQRSSSRE 233
           +RAR   SR+    +  R    + AY   SP  RS S  H RS        H+R  SRE
Sbjct: 604 SRARRASSREDGRPRKERRPHKKHAYKDDSPRRRSTSPDHTRSRRSHSKDRHRRERSRE 662


>AL683807-2|CAI41501.1|  695|Homo sapiens chromosome X and Y open
           reading frame 3 protein.
          Length = 695

 Score = 29.5 bits (63), Expect = 7.5
 Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
 Frame = +3

Query: 63  ARARAVWSRKSHTFQDPRT--LRSAYSAPSPHPRSESARHKRSACDQGAAYHQRSSSRE 233
           +RAR   SR+    +  R    + AY   SP  RS S  H RS        H+R  SRE
Sbjct: 604 SRARRASSREDGRPRKERRPHKKHAYKDDSPRRRSTSPDHTRSRRSHSKDRHRRERSRE 662


>AY129010-1|AAM98753.1|  198|Homo sapiens unknown protein.
          Length = 198

 Score = 29.1 bits (62), Expect = 9.9
 Identities = 24/73 (32%), Positives = 31/73 (42%)
 Frame = +3

Query: 6   PQNHFRPGCHGRHEPG*PFARARAVWSRKSHTFQDPRTLRSAYSAPSPHPRSESARHKRS 185
           PQ    P CH            RA  SR++H+    + L S   + SPH RS S  H RS
Sbjct: 67  PQKSHSPLCHSWSRNRLAHGSTRACSSRRAHSSWS-QNLHS--QSHSPHSRSHSP-HSRS 122

Query: 186 ACDQGAAYHQRSS 224
                 ++  RSS
Sbjct: 123 HSPHSWSHSLRSS 135


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,377,258
Number of Sequences: 237096
Number of extensions: 1520921
Number of successful extensions: 7202
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7092
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7192
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4990119376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)