Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS315H01f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75552-9|CAA99945.2|  705|Caenorhabditis elegans Hypothetical pr...    30   0.87 
Z75551-6|CAA99937.2|  705|Caenorhabditis elegans Hypothetical pr...    30   0.87 
U88170-2|AAB42250.1|  203|Caenorhabditis elegans Hypothetical pr...    30   0.87 
U88180-1|AAB42294.1|  203|Caenorhabditis elegans Hypothetical pr...    29   2.0  

>Z75552-9|CAA99945.2|  705|Caenorhabditis elegans Hypothetical
           protein W04D2.6a protein.
          Length = 705

 Score = 30.3 bits (65), Expect = 0.87
 Identities = 20/55 (36%), Positives = 30/55 (54%)
 Frame = +3

Query: 66  RARAVWSRKSHTFQDPRTLRSAYSAPSPHPRSESARHKRSACDQGAAYHQRSSSR 230
           R+R   SR+S + + PR+ RS  S  S +  SES     S+  + ++Y  RS SR
Sbjct: 233 RSRERTSRRSRSKESPRSKRSRRSRSSSNSSSES----DSSSSRSSSYSSRSRSR 283


>Z75551-6|CAA99937.2|  705|Caenorhabditis elegans Hypothetical
           protein W04D2.6a protein.
          Length = 705

 Score = 30.3 bits (65), Expect = 0.87
 Identities = 20/55 (36%), Positives = 30/55 (54%)
 Frame = +3

Query: 66  RARAVWSRKSHTFQDPRTLRSAYSAPSPHPRSESARHKRSACDQGAAYHQRSSSR 230
           R+R   SR+S + + PR+ RS  S  S +  SES     S+  + ++Y  RS SR
Sbjct: 233 RSRERTSRRSRSKESPRSKRSRRSRSSSNSSSES----DSSSSRSSSYSSRSRSR 283


>U88170-2|AAB42250.1|  203|Caenorhabditis elegans Hypothetical
           protein C10G11.9 protein.
          Length = 203

 Score = 30.3 bits (65), Expect = 0.87
 Identities = 19/72 (26%), Positives = 29/72 (40%)
 Frame = +3

Query: 27  GCHGRHEPG*PFARARAVWSRKSHTFQDPRTLRSAYSAPSPHPRSESARHKRSACDQGAA 206
           G       G P +R  +V S  +HT + P  +     +PSP  R  S R   S      +
Sbjct: 44  GARQSRSVGRPMSRRNSVRSISTHTAKSPSLVLVISGSPSPRRRRPSTRRSSSRRSVVRS 103

Query: 207 YHQRSSSREDTA 242
             + S SR  ++
Sbjct: 104 VSRGSKSRRSSS 115


>U88180-1|AAB42294.1|  203|Caenorhabditis elegans Hypothetical
           protein T27A3.4 protein.
          Length = 203

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 16/53 (30%), Positives = 22/53 (41%)
 Frame = +3

Query: 27  GCHGRHEPG*PFARARAVWSRKSHTFQDPRTLRSAYSAPSPHPRSESARHKRS 185
           G       G P +R  +V S  +HT + P  +     +PSP  R  S R   S
Sbjct: 44  GARQSRSVGRPMSRRNSVRSISTHTAKSPSLVLVISGSPSPRRRRPSTRRSSS 96


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,739,640
Number of Sequences: 27780
Number of extensions: 231381
Number of successful extensions: 677
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)