Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS315G09f
(357 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC15E1.03 |rpl36a||60S ribosomal protein L36/L42|Schizosacchar... 121 3e-29
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 28 0.37
SPCC4B3.02c |||Golgi transport protein Got1 |Schizosaccharomyces... 27 1.1
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|... 25 3.5
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 25 4.6
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 25 4.6
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 25 4.6
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 24 6.1
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 24 6.1
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 24 6.1
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 24 6.1
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 24 6.1
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 24 6.1
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 24 6.1
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 24 6.1
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 24 6.1
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 24 6.1
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 24 6.1
SPAC17G8.13c |mst2||histone acetyltransferase Mst2|Schizosacchar... 24 8.0
>SPAC15E1.03 |rpl36a||60S ribosomal protein
L36/L42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 106
Score = 121 bits (292), Expect = 3e-29
Identities = 56/106 (52%), Positives = 69/106 (65%), Gaps = 2/106 (1%)
Frame = +3
Query: 9 MVNVPKQRRTYXXXXXXXXXXXX--SQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXX 182
MVN+PK R+TY +QYKK + AQG+RRYDRKQ G+GGQ+KP+F
Sbjct: 1 MVNIPKTRKTYCPGKNCRKHTVHRVTQYKKGPDSKLAQGKRRYDRKQSGFGGQTKPVFHK 60
Query: 183 XXXXXXXIVLRLECADCKVRSQVALKRCKHFELGGDKKRKGQMIQF 320
+VLRLEC CK ++Q+ LKRCKHFELGG+KK KG IQF
Sbjct: 61 KAKVTKKVVLRLECVSCKYKNQLVLKRCKHFELGGEKKTKGAAIQF 106
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 28.3 bits (60), Expect = 0.37
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -3
Query: 118 PWAACLSLDFLYCDTLCTLWHL 53
P A + L +LY DTL + WHL
Sbjct: 679 PLAVAILLHYLYTDTLLSPWHL 700
>SPCC4B3.02c |||Golgi transport protein Got1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 129
Score = 26.6 bits (56), Expect = 1.1
Identities = 20/66 (30%), Positives = 31/66 (46%)
Frame = -3
Query: 199 LVVFAFFLKMGLD*PP*PCCLRSYRLLPWAACLSLDFLYCDTLCTLWHLHFLQYVLRCFG 20
L+VF FF+ G LR R+L S+ F + L TL+H + + + C G
Sbjct: 40 LLVFGFFMIAGFS-KSVSFFLRKDRMLG-----SISF-FSGLLLTLFHFPIIGFFVECLG 92
Query: 19 TFTIFE 2
F +F+
Sbjct: 93 FFNLFK 98
>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 310
Score = 25.0 bits (52), Expect = 3.5
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = +1
Query: 46 KNVNATKYTRYHSTKSPRKGTLPRVEDGMIVNSRVTVVSPNPSSKRRQKPLRKLCSVLS 222
K +A K R H+ + + V ++ V SPNP S +R+K R+ S+ S
Sbjct: 241 KEQHAKKPKRKHTRSTVPTSNVEPVSQPQPSPDKI-VSSPNPPSAKREKKKRRKSSMSS 298
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 24.6 bits (51), Expect = 4.6
Identities = 12/18 (66%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
Frame = -3
Query: 130 YRLLPWAACLSLDF-LYC 80
YR+LP A LSL F LYC
Sbjct: 1982 YRMLPSVASLSLPFLLYC 1999
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 24.6 bits (51), Expect = 4.6
Identities = 8/27 (29%), Positives = 16/27 (59%)
Frame = +1
Query: 91 SPRKGTLPRVEDGMIVNSRVTVVSPNP 171
SP +G+LPR ++ + +++ NP
Sbjct: 735 SPSRGSLPRRPSSALLTNPISITKSNP 761
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 24.6 bits (51), Expect = 4.6
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 97 RKGTLPRVEDGMIVNSRVTVVSPNPSSK 180
+K +L V G+ ++SRV ++ PN + K
Sbjct: 705 KKKSLDNVTVGLSLSSRVAILGPNGAGK 732
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 24.2 bits (50), Expect = 6.1
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = +1
Query: 55 NATKYTRYHSTKSPRKGTLPRVEDGMIVNSRVTVVSPNPSSKRR 186
N TK + + R +++DG+++NS+ ++ PN + R
Sbjct: 870 NDTKLLNLLNNEDKRVEENIQLKDGLLINSKDQILLPNDTQLTR 913
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 24.2 bits (50), Expect = 6.1
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = +1
Query: 55 NATKYTRYHSTKSPRKGTLPRVEDGMIVNSRVTVVSPNPSSKRR 186
N TK + + R +++DG+++NS+ ++ PN + R
Sbjct: 870 NDTKLLNLLNNEDKRVEENIQLKDGLLINSKDQILLPNDTQLTR 913
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 24.2 bits (50), Expect = 6.1
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = +1
Query: 55 NATKYTRYHSTKSPRKGTLPRVEDGMIVNSRVTVVSPNPSSKRR 186
N TK + + R +++DG+++NS+ ++ PN + R
Sbjct: 870 NDTKLLNLLNNEDKRVEENIQLKDGLLINSKDQILLPNDTQLTR 913
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 24.2 bits (50), Expect = 6.1
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = +1
Query: 55 NATKYTRYHSTKSPRKGTLPRVEDGMIVNSRVTVVSPNPSSKRR 186
N TK + + R +++DG+++NS+ ++ PN + R
Sbjct: 870 NDTKLLNLLNNEDKRVEENIQLKDGLLINSKDQILLPNDTQLTR 913
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 24.2 bits (50), Expect = 6.1
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = +1
Query: 55 NATKYTRYHSTKSPRKGTLPRVEDGMIVNSRVTVVSPNPSSKRR 186
N TK + + R +++DG+++NS+ ++ PN + R
Sbjct: 870 NDTKLLNLLNNEDKRVEENIQLKDGLLINSKDQILLPNDTQLTR 913
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 24.2 bits (50), Expect = 6.1
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = +1
Query: 55 NATKYTRYHSTKSPRKGTLPRVEDGMIVNSRVTVVSPNPSSKRR 186
N TK + + R +++DG+++NS+ ++ PN + R
Sbjct: 870 NDTKLLNLLNNEDKRVEENIQLKDGLLINSKDQILLPNDTQLTR 913
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 24.2 bits (50), Expect = 6.1
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = +1
Query: 55 NATKYTRYHSTKSPRKGTLPRVEDGMIVNSRVTVVSPNPSSKRR 186
N TK + + R +++DG+++NS+ ++ PN + R
Sbjct: 870 NDTKLLNLLNNEDKRVEENIQLKDGLLINSKDQILLPNDTQLTR 913
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 24.2 bits (50), Expect = 6.1
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = +1
Query: 55 NATKYTRYHSTKSPRKGTLPRVEDGMIVNSRVTVVSPNPSSKRR 186
N TK + + R +++DG+++NS+ ++ PN + R
Sbjct: 870 NDTKLLNLLNNEDKRVEENIQLKDGLLINSKDQILLPNDTQLTR 913
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 24.2 bits (50), Expect = 6.1
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = +1
Query: 55 NATKYTRYHSTKSPRKGTLPRVEDGMIVNSRVTVVSPNPSSKRR 186
N TK + + R +++DG+++NS+ ++ PN + R
Sbjct: 870 NDTKLLNLLNNEDKRVEENIQLKDGLLINSKDQILLPNDTQLTR 913
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 24.2 bits (50), Expect = 6.1
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = +1
Query: 55 NATKYTRYHSTKSPRKGTLPRVEDGMIVNSRVTVVSPNPSSKRR 186
N TK + + R +++DG+++NS+ ++ PN + R
Sbjct: 870 NDTKLLNLLNNEDKRVEENIQLKDGLLINSKDQILLPNDTQLTR 913
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 24.2 bits (50), Expect = 6.1
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = +1
Query: 55 NATKYTRYHSTKSPRKGTLPRVEDGMIVNSRVTVVSPNPSSKRR 186
N TK + + R +++DG+++NS+ ++ PN + R
Sbjct: 870 NDTKLLNLLNNEDKRVEENIQLKDGLLINSKDQILLPNDTQLTR 913
>SPAC17G8.13c |mst2||histone acetyltransferase
Mst2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 407
Score = 23.8 bits (49), Expect = 8.0
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -3
Query: 259 FNATCDLTLQSAHSRRSTIFLVVFAFFL 176
+N +C LTL R +FL+ F++ L
Sbjct: 236 YNVSCILTLPIYQRRGYGVFLIDFSYLL 263
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,447,673
Number of Sequences: 5004
Number of extensions: 27246
Number of successful extensions: 88
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 107972554
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -