Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS315G07f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPMIT.10 |atp9||F0-ATPase subunit 9; similar to S. cerevisiae Q0... 42 4e-05
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom... 26 3.0
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S... 26 3.9
SPBC11B10.02c |his3||histidinol-phosphate aminotransferase imida... 26 3.9
SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces ... 25 5.2
SPAC1142.07c |vps32|snf7|vacuolar sorting protein Vps32|Schizosa... 25 6.8
SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|... 25 6.8
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce... 25 6.8
SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha... 25 9.0
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch... 25 9.0
SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosacchar... 25 9.0
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha... 25 9.0
>SPMIT.10 |atp9||F0-ATPase subunit 9; similar to S. cerevisiae
Q0130|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 74
Score = 42.3 bits (95), Expect = 4e-05
Identities = 20/33 (60%), Positives = 25/33 (75%)
Frame = +1
Query: 304 FGSLIIGYARNPSLKQQLFSYAILGFALSXAYG 402
F +LI G +RNPS++ LFS AILGFAL+ A G
Sbjct: 28 FSNLISGTSRNPSVRPHLFSMAILGFALTEATG 60
>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 992
Score = 26.2 bits (55), Expect = 3.0
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1
Query: 394 AYGSVLSYDGVPAALRFLSY 453
AYG+ LSY G+ L F +Y
Sbjct: 858 AYGAGLSYSGIDGVLSFFTY 877
>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
Mde10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 512
Score = 25.8 bits (54), Expect = 3.9
Identities = 10/38 (26%), Positives = 17/38 (44%)
Frame = +3
Query: 51 NAVCRQTDRPCSQVCHLLQLCTGATTCSSTHPYTDGTC 164
+ VC R C ++ + L + +C + DGTC
Sbjct: 417 SGVCTSASRQCKKLTNFSSLSCHSDSCKVSCQNEDGTC 454
>SPBC11B10.02c |his3||histidinol-phosphate aminotransferase
imidazole acetol phosphate transaminase
His3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 384
Score = 25.8 bits (54), Expect = 3.9
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +1
Query: 358 FSYAILGFALSXAYGSVLSYDGV 426
FS +L A AYGSV+S DGV
Sbjct: 25 FSEGVLLDANECAYGSVISVDGV 47
>SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 180
Score = 25.4 bits (53), Expect = 5.2
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +2
Query: 125 HLQQYPPIHRWYLLSLHSSLQC 190
HL Y P WYL SLH C
Sbjct: 63 HLTIYEPQLTWYLSSLHRITGC 84
>SPAC1142.07c |vps32|snf7|vacuolar sorting protein
Vps32|Schizosaccharomyces pombe|chr 1|||Manual
Length = 222
Score = 25.0 bits (52), Expect = 6.8
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1
Query: 139 PTHTQMVPAVPTQLSAVRS 195
P HT VPAVP+Q+ + S
Sbjct: 182 PVHTPAVPAVPSQVKDLPS 200
>SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 822
Score = 25.0 bits (52), Expect = 6.8
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = +3
Query: 261 DSGSSWFRSWYW 296
D G SWFR+ YW
Sbjct: 421 DCGMSWFRNEYW 432
>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1261
Score = 25.0 bits (52), Expect = 6.8
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +1
Query: 316 IIGYARNPSLKQQLFSYAILGFALSXAYGSVLSYDGVPAALRFLSYLL*KHYYCHPTYE 492
I GY + L+ +L S + GF L A +V+ +G + L+ LL Y + TY+
Sbjct: 646 ITGYLVSRRLEPELISPRVFGFLLEYAAFNVVQTEGTFTSKVILTDLL--KCYSNGTYK 702
>SPBC1348.02 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 24.6 bits (51), Expect = 9.0
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +3
Query: 90 VCHLLQLCTGATT 128
+CHLL+ CT TT
Sbjct: 246 ICHLLKQCTSVTT 258
>SPBPB2B2.19c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 24.6 bits (51), Expect = 9.0
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +3
Query: 90 VCHLLQLCTGATT 128
+CHLL+ CT TT
Sbjct: 246 ICHLLKQCTSVTT 258
>SPAC977.01 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1||Partial|Manual
Length = 316
Score = 24.6 bits (51), Expect = 9.0
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +3
Query: 90 VCHLLQLCTGATT 128
+CHLL+ CT TT
Sbjct: 218 ICHLLKQCTSVTT 230
>SPAC750.05c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 344
Score = 24.6 bits (51), Expect = 9.0
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +3
Query: 90 VCHLLQLCTGATT 128
+CHLL+ CT TT
Sbjct: 246 ICHLLKQCTSVTT 258
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,046,694
Number of Sequences: 5004
Number of extensions: 39128
Number of successful extensions: 104
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -