Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS315G05f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb...    26   3.9  
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    25   5.2  
SPCC126.01c ||SPCC576.18c|conserved fungal protein|Schizosacchar...    25   6.8  
SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomy...    25   9.0  
SPBC3H7.11 |||actin binding methyltransferase |Schizosaccharomyc...    25   9.0  

>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1379

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = -2

Query: 451  GRHLPVKVNSYILGCTKSIGNGIFPVPVILKSF*LKTPWF*KSKTIYLFKKRF 293
            GR LP+KV   +   +K +G+ ++ +  + K    K P+F K K      K+F
Sbjct: 1311 GRKLPLKVPDSVWLSSKRMGDMLWRLEKLQKKTDNKKPFFKKKKKKRKHLKKF 1363


>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1297

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +2

Query: 158 SSGQHTVFVLNHFESHNKSLLLNFLESIPFSQRLN 262
           + G H  F     E+H+ S +L F++ + F++ LN
Sbjct: 506 TEGGHAWFWSVSNEAHDGSAVLRFIDRVNFTKNLN 540


>SPCC126.01c ||SPCC576.18c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 369

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = -1

Query: 122 TIR-WFAEFQRGRVKLSDDPRQGRPKTAVTQENVDAVRKLI 3
           TIR W  E+     +  D P  G P T +T E +  + +L+
Sbjct: 327 TIRVWDLEYSADNNEADDHPSLGPPSTKLTAEELAELEELM 367


>SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 589

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/19 (57%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
 Frame = +2

Query: 434 HRKVTTSGITKAE-TLNCK 487
           H K+TTSG+TK   T  CK
Sbjct: 221 HHKLTTSGVTKMNITERCK 239


>SPBC3H7.11 |||actin binding methyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 248

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = +3

Query: 372 GTGNIPFPILLVQPSM*LF 428
           G GN+ +P+L VQP++ ++
Sbjct: 65  GVGNLVYPLLEVQPNLKIY 83


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,116,258
Number of Sequences: 5004
Number of extensions: 42713
Number of successful extensions: 88
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)