Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS315G03f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3H7.04 |||mitochondrial ribosomal protein subunit S26|Schizo... 28 0.73
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar... 27 1.7
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo... 27 2.2
SPCC1393.08 |||transcription factor, zf-GATA type |Schizosacchar... 27 2.2
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi... 26 3.0
SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 3.9
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 26 3.9
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 25 5.2
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 25 6.8
SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol pyrop... 25 6.8
SPBC2G5.01 |||DUF1682 family protein|Schizosaccharomyces pombe|c... 25 6.8
SPCC1223.02 |nmt1|thi3|no message in thiamine Nmt1|Schizosacchar... 25 6.8
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu... 25 9.0
SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces pom... 25 9.0
SPCC18.06c |caf1|pop2|CCR4-Not complex subunit Caf1|Schizosaccha... 25 9.0
>SPBC3H7.04 |||mitochondrial ribosomal protein subunit
S26|Schizosaccharomyces pombe|chr 2|||Manual
Length = 220
Score = 28.3 bits (60), Expect = 0.73
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +3
Query: 126 RQCKIHPSPWKKAQDLLVQLCFTTIRPEKRYKMLQPVQQRFF 251
++CKIH +P++ DL+VQ R Q V FF
Sbjct: 40 KECKIHQTPYRVPSDLMVQSASDPARANLFNYSSQLVNHDFF 81
>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 682
Score = 27.1 bits (57), Expect = 1.7
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = +2
Query: 290 YTKTRVFENICTYSMSCILSFIIGYSFTSYLLIADHGLRDYSQGFF 427
+ + R+ + + Y ++ IL+FI+ SF Y + +H FF
Sbjct: 560 FREHRILKQLWPYIIAMILNFIVRSSFIFYCIFPNHIQHSSGISFF 605
>SPAPB8E5.07c |||ribosome biogenesis protein
Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1163
Score = 26.6 bits (56), Expect = 2.2
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +2
Query: 344 LSFIIGYSFTSYLLIADHGL-RDYSQGFFEESHDFFKNLCPAV 469
+S + YS L++ L +DY+ FE H+F +++ PA+
Sbjct: 667 ISSPMAYSLIDLLIVISPYLNQDYAVTLFEYVHEFLRHVNPAI 709
>SPCC1393.08 |||transcription factor, zf-GATA type
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 26.6 bits (56), Expect = 2.2
Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +3
Query: 117 NLCRQCKIHPSP-WKKAQDLLVQLCFTTIRPEKRYKMLQPVQQR 245
++C C + +P W++ D L LC K+Y +++P+ R
Sbjct: 363 HVCFNCGVTETPLWRRTSDKLNFLCNACGLYNKQYGVMRPLSPR 406
>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
Urb1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1568
Score = 26.2 bits (55), Expect = 3.0
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +2
Query: 287 IYTKTRVFENICTYSMSCILS 349
IY + VFE ICT SC+++
Sbjct: 1496 IYLRRHVFEMICTLYNSCVVN 1516
>SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 600
Score = 25.8 bits (54), Expect = 3.9
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +2
Query: 404 RDYSQGFFEESHDFFKNLCPAVLYFGSTVGTFSMLMIKR 520
R+ S FF++S FF C L F STV + ++ R
Sbjct: 62 RNISNTFFKKSIFFFVYYCKQALEFISTVFSIIKFLLNR 100
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 25.8 bits (54), Expect = 3.9
Identities = 19/67 (28%), Positives = 33/67 (49%)
Frame = +2
Query: 308 FENICTYSMSCILSFIIGYSFTSYLLIADHGLRDYSQGFFEESHDFFKNLCPAVLYFGST 487
F+ I T ++ + + ++ S ++I RD S FF++ +DFF+ AVL
Sbjct: 1556 FQTILTNEINTVTANRYSFALDSAIVILQ---RDPS--FFKDKNDFFRGSMDAVLAISHL 1610
Query: 488 VGTFSML 508
V S+L
Sbjct: 1611 VENESIL 1617
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 25.4 bits (53), Expect = 5.2
Identities = 13/52 (25%), Positives = 26/52 (50%)
Frame = +2
Query: 134 QNTPVTMEKSSGSTSSVVFYNNSTGEKIQDVTTGATKVFLNLDEEKQDKTAI 289
+++ T++++SG+ + Y NS EK+ + K L K+D T +
Sbjct: 45 ESSKSTVKRNSGTNGASTDYKNSQKEKVINPVFDPRKPAHELKGNKRDNTFV 96
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2685
Score = 25.0 bits (52), Expect = 6.8
Identities = 8/22 (36%), Positives = 17/22 (77%)
Frame = +2
Query: 341 ILSFIIGYSFTSYLLIADHGLR 406
+LS+++G+ FT++ + +GLR
Sbjct: 27 VLSYVLGWPFTNFGFFSVYGLR 48
>SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol
pyrophosphate phosphatase fusion 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +2
Query: 263 EEKQDKTAIYTKTRVFENICTYSMSCILSFIIG 361
+EK++KT + TR + TY +S ++S I G
Sbjct: 297 DEKEEKTELEESTRPSNFLSTYFVSPLVSAIDG 329
>SPBC2G5.01 |||DUF1682 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 374
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/38 (28%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Frame = +2
Query: 287 IYTKTRVF--ENICTYSMSCILSFIIGYSFTSYLLIAD 394
+YT ++F +++ YS++ I+ ++G +S L +AD
Sbjct: 125 VYTTLQLFPRQDLLAYSLNQIVEILLGNVMSSVLPVAD 162
>SPCC1223.02 |nmt1|thi3|no message in thiamine
Nmt1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 346
Score = 25.0 bits (52), Expect = 6.8
Identities = 8/19 (42%), Positives = 10/19 (52%)
Frame = -2
Query: 241 CCTGCNILYLFSGRIVVKH 185
CC C ILY+ + KH
Sbjct: 194 CCCFCTILYIAHDEFIAKH 212
>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1405
Score = 24.6 bits (51), Expect = 9.0
Identities = 13/53 (24%), Positives = 23/53 (43%)
Frame = +2
Query: 161 SSGSTSSVVFYNNSTGEKIQDVTTGATKVFLNLDEEKQDKTAIYTKTRVFENI 319
SS SV F N K +T + +++E+ + + R+FEN+
Sbjct: 503 SSPQNISVSFEKNEITSKTPPMTVMSLAFRTLINKEQNKQEVVMISARIFENV 555
>SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 437
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/40 (22%), Positives = 20/40 (50%)
Frame = +3
Query: 93 KAIRQRFLNLCRQCKIHPSPWKKAQDLLVQLCFTTIRPEK 212
K++R+ N+ + + WK D + C+T + P++
Sbjct: 357 KSMRKALRNILEKDLKNKHSWKHITDQIGMFCYTGLNPQQ 396
>SPCC18.06c |caf1|pop2|CCR4-Not complex subunit
Caf1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 332
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = +2
Query: 167 GSTSSVVFYNNSTGEKIQ 220
GST SV+++NNS+ +IQ
Sbjct: 272 GSTGSVLWHNNSSTPQIQ 289
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,078,383
Number of Sequences: 5004
Number of extensions: 42425
Number of successful extensions: 131
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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