Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS315G01f
         (513 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         28   0.94 
SPBC887.16 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual         26   3.8  
SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex sub...    25   6.7  
SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   8.8  
SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual      25   8.8  

>SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 128

 Score = 27.9 bits (59), Expect = 0.94
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -2

Query: 254 HLFIYLSN-FLFLFYLINIVFFFFRYNNINSKC 159
           H  +Y+S  FLFL Y+++IV +   YN  +  C
Sbjct: 31  HRLLYISIIFLFLNYVVDIVCYVKNYNGFSFFC 63


>SPBC887.16 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 109

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 287 LCNEHFNNVYQHLFIYLSNFLFLFYLINIVFFF 189
           L    F N + +L     +F FLF+L+N + FF
Sbjct: 63  LAKTEFKNSFSNL-----HFFFLFWLLNFILFF 90


>SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex
           subunit 8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 214

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = -3

Query: 493 CFWXFFFKYDCCIDCCHPK 437
           C   FF  Y C  DC  PK
Sbjct: 190 CIEEFFHLYHCARDCADPK 208


>SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 500

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = -2

Query: 230 FLFLFYLINIVFFF 189
           F++ FY++ I+FFF
Sbjct: 268 FMWFFYMLTIIFFF 281


>SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 324

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 261 LSTSIYLPIQFFIFILFNKYSFFLFPI 181
           L++ +   I  F FILF  + F LFPI
Sbjct: 217 LASRLEKSINVFFFILFAVHWFALFPI 243


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,818,658
Number of Sequences: 5004
Number of extensions: 32437
Number of successful extensions: 55
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)