Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS315F12f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    25   0.62 
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    24   0.82 
AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family p...    23   2.5  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    23   2.5  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   3.3  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    21   5.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   5.8  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 24.6 bits (51), Expect = 0.62
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -2

Query: 475 GSFQDH*RSVAHTHRCSSHTRLHQHNTAAPAWSSFP 368
           G    H  +  H H   + T  HQH+T   A SS+P
Sbjct: 420 GHGHSHIHATPHHHHSHAATPHHQHSTPL-AHSSYP 454


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 24.2 bits (50), Expect = 0.82
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = -1

Query: 326 SPCTSHACSHRFRLHGSIDFGIHRPATCWCVSQQ 225
           +P T H   H  R   S+D   HR    W V ++
Sbjct: 77  NPETHHPIRHGRRQSRSMDLNAHREQMSWPVKKE 110


>AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family
           protein protein.
          Length = 166

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -3

Query: 198 VPHATRLPRSQHQVRRASRCAAIYNVD 118
           VP+ +RL +S+  +     C  I N+D
Sbjct: 97  VPNTSRLDKSEISLATKQACGFIDNID 123


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = -1

Query: 230 QQCSLTHCTSASPTRHVCRDRNTRSVGHRAVL 135
           Q C    C+ AS  RHV      R   +R V+
Sbjct: 9   QLCGKVLCSKASLKRHVADKHAERQEEYRCVI 40


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = -2

Query: 355  TQGSRNTTYSLP 320
            TQ SRN TYS P
Sbjct: 1297 TQPSRNNTYSTP 1308


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -3

Query: 360 PEPRVAGTPHTLSLHFACLLTQVQTARLH 274
           P      TP TL+L    LL +++   LH
Sbjct: 26  PASPTLSTPPTLNLMEQILLAKIEKQNLH 54


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +2

Query: 68  TTTTADTERRNRTSLTPST 124
           TTTT  T     T+ TP+T
Sbjct: 662 TTTTTTTTTTTTTTTTPNT 680


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,898
Number of Sequences: 438
Number of extensions: 3373
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)