Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS315F09f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    22   3.3  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    22   3.3  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    22   3.3  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    22   3.3  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    22   3.3  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    22   3.3  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    22   3.3  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    22   3.3  
DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              21   5.8  

>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = +1

Query: 352 ALGEKLDDSEVAEVTKDCMDPEDDXRHDPLRSIPEXGH 465
           A G +L +     +  + +D +DD RH    + P  G+
Sbjct: 328 AKGMELQEKSSKSLLANVLDIDDDIRHKNSAANPPSGY 365


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = +1

Query: 352 ALGEKLDDSEVAEVTKDCMDPEDDXRHDPLRSIPEXGH 465
           A G +L +     +  + +D +DD RH    + P  G+
Sbjct: 328 AKGMELQEKSSKSLLANVLDIDDDIRHKNSAANPPSGY 365


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = +1

Query: 352 ALGEKLDDSEVAEVTKDCMDPEDDXRHDPLRSIPEXGH 465
           A G +L +     +  + +D +DD RH    + P  G+
Sbjct: 328 AKGMELQEKSSKSLLANVLDIDDDIRHKNSAANPPSGY 365


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = +1

Query: 352 ALGEKLDDSEVAEVTKDCMDPEDDXRHDPLRSIPEXGH 465
           A G +L +     +  + +D +DD RH    + P  G+
Sbjct: 328 AKGMELQEKSSKSLLANVLDIDDDIRHKNSAANPPSGY 365


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = +1

Query: 352 ALGEKLDDSEVAEVTKDCMDPEDDXRHDPLRSIPEXGH 465
           A G +L +     +  + +D +DD RH    + P  G+
Sbjct: 328 AKGMELQEKSSKSLLANVLDIDDDIRHKNSAANPPSGY 365


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = +1

Query: 352 ALGEKLDDSEVAEVTKDCMDPEDDXRHDPLRSIPEXGH 465
           A G +L +     +  + +D +DD RH    + P  G+
Sbjct: 328 AKGMELQEKSSKSLLANVLDIDDDIRHKNSAANPPSGY 365


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = +1

Query: 352 ALGEKLDDSEVAEVTKDCMDPEDDXRHDPLRSIPEXGH 465
           A G +L +     +  + +D +DD RH    + P  G+
Sbjct: 396 AKGMELQEKSSKSLLANVLDIDDDIRHKNSAANPPSGY 433


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = +1

Query: 352 ALGEKLDDSEVAEVTKDCMDPEDDXRHDPLRSIPEXGH 465
           A G +L +     +  + +D +DD RH    + P  G+
Sbjct: 396 AKGMELQEKSSKSLLANVLDIDDDIRHKNSAANPPSGY 433


>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = -2

Query: 304 SCHTASDIPGNLHTLPGLCLSLLG 233
           S  T  ++   LHT+  +C+  +G
Sbjct: 15  SAMTLDELKSGLHTVQSVCMKEIG 38


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.316    0.136    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,113
Number of Sequences: 438
Number of extensions: 2097
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)