Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS315F08f
(515 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe... 31 0.14
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe... 31 0.14
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe... 31 0.14
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe... 31 0.14
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces... 28 0.72
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 28 0.95
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 27 1.3
SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa... 26 2.9
SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster... 26 2.9
SPBC428.03c |pho4||thiamine-repressible acid phosphatase Pho4|Sc... 25 6.7
SPCC285.11 |ucp10||UBA/UAS domain protein Ucp10|Schizosaccharomy... 25 6.7
SPCC63.07 |||tRNA guanylyltransferase |Schizosaccharomyces pombe... 25 8.9
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|... 25 8.9
>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 30.7 bits (66), Expect = 0.14
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = -2
Query: 244 SIICSSYARIDAGYFAELFSVQVQVN-GFKNRFSLGQRRVTEKQGVGLVVDYQLEWIVHI 68
S+I S + I GYF F+V +N GF+++F++ +T G + + QL + +I
Sbjct: 275 SLILSLFL-ISFGYFFTFFAVFSVINYGFRHKFTVAWWAMTFPLGTMSISNTQLSKVTNI 333
Query: 67 IF 62
IF
Sbjct: 334 IF 335
>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 30.7 bits (66), Expect = 0.14
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = -2
Query: 244 SIICSSYARIDAGYFAELFSVQVQVN-GFKNRFSLGQRRVTEKQGVGLVVDYQLEWIVHI 68
S+I S + I GYF F+V +N GF+++F++ +T G + + QL + +I
Sbjct: 275 SLILSLFL-ISFGYFFTFFAVFSVINYGFRHKFTVAWWAMTFPLGTMSISNTQLSKVTNI 333
Query: 67 IF 62
IF
Sbjct: 334 IF 335
>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 30.7 bits (66), Expect = 0.14
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = -2
Query: 244 SIICSSYARIDAGYFAELFSVQVQVN-GFKNRFSLGQRRVTEKQGVGLVVDYQLEWIVHI 68
S+I S + I GYF F+V +N GF+++F++ +T G + + QL + +I
Sbjct: 275 SLILSLFL-ISFGYFFTFFAVFSVINYGFRHKFTVAWWAMTFPLGTMSISNTQLSKVTNI 333
Query: 67 IF 62
IF
Sbjct: 334 IF 335
>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 30.7 bits (66), Expect = 0.14
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = -2
Query: 244 SIICSSYARIDAGYFAELFSVQVQVN-GFKNRFSLGQRRVTEKQGVGLVVDYQLEWIVHI 68
S+I S + I GYF F+V +N GF+++F++ +T G + + QL + +I
Sbjct: 275 SLILSLFL-ISFGYFFTFFAVFSVINYGFRHKFTVAWWAMTFPLGTMSISNTQLSKVTNI 333
Query: 67 IF 62
IF
Sbjct: 334 IF 335
>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1441
Score = 28.3 bits (60), Expect = 0.72
Identities = 22/81 (27%), Positives = 36/81 (44%)
Frame = +2
Query: 32 VHGNQEVEVLKDNVHNPFQLVVDYQTNTLFFSYSSLSQGKTVLKSVYLNLNTKEFGEISG 211
+ G + + PF ++V T+ FF L GK+V K + L E +
Sbjct: 351 LEGTIAIPLTSSKTETPFVVLV--HTSGQFFYLDFLLDGKSV-KGLSLQALDLEIND-DF 406
Query: 212 INSGIATAYDRSKHVVYLGGQ 274
+ SGI A +++V+LG Q
Sbjct: 407 LKSGITCAVPAGENLVFLGSQ 427
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 27.9 bits (59), Expect = 0.95
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +2
Query: 35 HGNQEVEVLKDNVHNPFQLVVDYQTNT-LFFSYSSLSQGKTVLKSVYLNLNTKEFGEISG 211
H ++V++ V + V Y N L F S S GKT L S ++N NT +
Sbjct: 396 HNTDALKVMRKRVSQN-RKVSKYDRNVFLCFVVGSKSCGKTALLSSFINNNTNRLTPNTV 454
Query: 212 INS 220
+NS
Sbjct: 455 VNS 457
>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
Spt6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1365
Score = 27.5 bits (58), Expect = 1.3
Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
Frame = +2
Query: 59 LKDNVHNPFQLVVDYQTNTLFFSYSSLSQGKTVLKSVYLN--LNTKEFGEISGINSGIAT 232
++DN +P +L Y TN L L + + VL ++ K F + N+G+ T
Sbjct: 482 VEDNTLSPEELSRTYVTNELSSPEQVLQKARRVLAEEIIHDPQFRKSFRD-KLYNAGVVT 540
Query: 233 AYDRSKHVVYLGGQDGIYTFDY 298
K V +G + Y F Y
Sbjct: 541 VLATQKGVRKIGSEHPYYEFKY 562
>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1215
Score = 26.2 bits (55), Expect = 2.9
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +1
Query: 307 ICKEFACDKLQHLANV 354
+CK CD+L HL NV
Sbjct: 865 VCKAVRCDELMHLKNV 880
>SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster
type|Schizosaccharomyces pombe|chr 1|||Manual
Length = 480
Score = 26.2 bits (55), Expect = 2.9
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +3
Query: 336 TASGKCFIVPSTASTSRLSILTKKRLSILTVK*DLYLNSPTSKQDDC 476
+ +GK ++PS AST LS +T + D L S T+ DDC
Sbjct: 67 STNGKTNVLPSYASTPSLSPMTSSHFPYAS---DGTLISATNHCDDC 110
>SPBC428.03c |pho4||thiamine-repressible acid phosphatase
Pho4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 463
Score = 25.0 bits (52), Expect = 6.7
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +3
Query: 402 KKRLSILTVK*DLYLNSPTSKQDDCCRPKQIYI 500
K L ++V + Y N PT+ + C KQ+++
Sbjct: 33 KDHLGTISVYHEPYFNGPTTSFPESCAIKQVHL 65
>SPCC285.11 |ucp10||UBA/UAS domain protein Ucp10|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 427
Score = 25.0 bits (52), Expect = 6.7
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +2
Query: 98 DYQTNTLFFSYSSLSQGKTVLKSVYLNLNTKEF 196
+Y LFF+ S +T +SV +N KEF
Sbjct: 140 NYGVALLFFTSSKNDDSETFSRSVLMNQELKEF 172
>SPCC63.07 |||tRNA guanylyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 261
Score = 24.6 bits (51), Expect = 8.9
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = +2
Query: 287 TFDYTTKSAKNLRVT-SYSIWQMFHCPVHGLYFTTF 391
+FD N++V Y W+ C ++ LY TTF
Sbjct: 125 SFDGRAVLYPNMKVLRDYLHWRQVDCHINNLYNTTF 160
>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 468
Score = 24.6 bits (51), Expect = 8.9
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -2
Query: 112 VGLVVDYQLEWIVHIIF*YFHFLVSVNESDYSYQYYQ 2
V L+ Y + W +H I FH L++V S Y Q
Sbjct: 183 VSLLQLYLISWTIHFINFVFHSLLAVFFSSKYTSYAQ 219
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,239,312
Number of Sequences: 5004
Number of extensions: 48181
Number of successful extensions: 158
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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