Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS315F08f
(515 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0376 - 20754386-20755392,20755683-20756320,20756433-207566... 30 0.96
04_04_0735 - 27667780-27667887,27668116-27668211,27668346-276684... 29 2.2
03_05_1122 + 30546314-30549277,30549615-30549693,30549857-305499... 29 2.2
10_08_0328 - 16805296-16806121,16806493-16807274 29 2.9
08_01_0473 - 4169754-4169938,4170039-4170121,4170297-4170347,417... 28 3.9
08_02_1055 + 23986258-23986459,23986734-23986825,23987389-239874... 28 5.1
08_01_0238 - 1988688-1988830,1988989-1989257,1989339-1989600,198... 27 6.8
12_02_0795 + 23217463-23217684,23218296-23219155,23220001-232209... 27 8.9
03_03_0111 + 14527548-14528543,14529158-14529337,14529428-14529805 27 8.9
>05_04_0376 -
20754386-20755392,20755683-20756320,20756433-20756627,
20757730-20757795,20757942-20758007,20758402-20758445
Length = 671
Score = 30.3 bits (65), Expect = 0.96
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +2
Query: 95 VDYQTNTLFFSYSSLSQGKTVLKSVYLNLNTKEFGEISGINSGIATAYDRSKH 253
VD Q ++ + +L+ G LK LN N+ E+G + + G A + R +H
Sbjct: 145 VDVQWEDVYKALENLNDGSQKLKVGLLNFNSTEYGSWAQLLPGSAVSIVRLEH 197
>04_04_0735 -
27667780-27667887,27668116-27668211,27668346-27668455,
27668545-27668648,27669279-27669556
Length = 231
Score = 29.1 bits (62), Expect = 2.2
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 10/82 (12%)
Frame = -2
Query: 457 VGEFRYRSYLTVRIDKRFFVRIESREVEAVDGTMKHL----PD---AVTCHTQILC---R 308
+ E + Y +R D RF VR++ +++ V ++HL PD V +C +
Sbjct: 152 LSELNLKFYTPLRKDDRFVVRMKVVKIKGVRIIVEHLIETLPDRKLVVDAKATAVCLDNK 211
Query: 307 FRCVIKCIYPILSTKVHNVFAS 242
+R ++P LSTK+H F S
Sbjct: 212 YRPTR--VFPELSTKLHQFFLS 231
>03_05_1122 + 30546314-30549277,30549615-30549693,30549857-30549945,
30550422-30550538,30550873-30551111,30552279-30552365,
30552732-30552831,30553319-30553532,30553617-30553777
Length = 1349
Score = 29.1 bits (62), Expect = 2.2
Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Frame = -2
Query: 439 RSYLTVR--IDKRFFVRIESREVEAVDGTMKHLPDAVTCHTQILCRFRCVIKCIYPILST 266
R+ L V+ ++ F RI R E V T+ L + V C+++I + +C PI+
Sbjct: 1089 RNLLAVKKDLEPEFSCRIIQRIHENVPETVVALDERVECNSKIAVALSLMDECFLPIVDQ 1148
Query: 265 KVH-NVFASII--C-SSYARID 212
+ N+ +++ C S++ R+D
Sbjct: 1149 RTGINLIRNVVYNCGSNFVRMD 1170
>10_08_0328 - 16805296-16806121,16806493-16807274
Length = 535
Score = 28.7 bits (61), Expect = 2.9
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +2
Query: 200 EISGINSGIATAYDRSKHVVYLGGQDGIYTFDYTTKSAKNL 322
+ SG S + T+Y+ S H VYL G F T + K L
Sbjct: 407 DFSGEISALGTSYNCSLHSVYLAGNGFTGVFPSTLEGCKTL 447
>08_01_0473 -
4169754-4169938,4170039-4170121,4170297-4170347,
4170434-4170507,4170585-4170679,4171672-4171754,
4171848-4172104
Length = 275
Score = 28.3 bits (60), Expect = 3.9
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Frame = -2
Query: 496 YICFGRQQSSCFDVGEFRYRSYLTVRIDKRFFVRI----ESREVEAV 368
++ + R+QSSCF G YR +T R D R+ RI ESR+ + +
Sbjct: 164 FVVYIRRQSSCFSRGTSSYRG-VTRRKDGRWQARIGRIGESRDTKDI 209
>08_02_1055 +
23986258-23986459,23986734-23986825,23987389-23987412,
23987932-23988068,23988533-23988692,23988997-23989006,
23989449-23989726,23990059-23990136
Length = 326
Score = 27.9 bits (59), Expect = 5.1
Identities = 17/63 (26%), Positives = 25/63 (39%)
Frame = +2
Query: 176 NLNTKEFGEISGINSGIATAYDRSKHVVYLGGQDGIYTFDYTTKSAKNLRVTSYSIWQMF 355
N+ ++ +G T D V+Y G G+ T V S+SIW +F
Sbjct: 104 NMKHRDIRRFAGTVPNATTTGDIDSMVMYAGQGVGLITEIIPASEV----VKSWSIWHVF 159
Query: 356 HCP 364
CP
Sbjct: 160 FCP 162
>08_01_0238 -
1988688-1988830,1988989-1989257,1989339-1989600,
1989693-1989805,1990560-1990594,1990771-1990878,
1992178-1992483
Length = 411
Score = 27.5 bits (58), Expect = 6.8
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -2
Query: 283 YPILSTKVHNVFASIICSSYARI 215
YP+ T +H VF+S++C + +I
Sbjct: 114 YPVALTLLHMVFSSVVCFAITKI 136
>12_02_0795 +
23217463-23217684,23218296-23219155,23220001-23220929,
23221184-23221968
Length = 931
Score = 27.1 bits (57), Expect = 8.9
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -2
Query: 385 REVEAVDGTMKHLPDAVTCHTQILCR 308
REVEA++ ++H D + CH + R
Sbjct: 882 REVEALEDAIRHSADLLPCHPAVEVR 907
>03_03_0111 + 14527548-14528543,14529158-14529337,14529428-14529805
Length = 517
Score = 27.1 bits (57), Expect = 8.9
Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 3/80 (3%)
Frame = +2
Query: 35 HGNQEVEVLKDNVHNPFQLVVDYQTNTLFFSYSSLSQGKT---VLKSVYLNLNTKEFGEI 205
H + EVE++KD P + Q + +S+ T LK + LN+ E
Sbjct: 336 HDSAEVELIKDIPQLPHATSLSLQVFAQVYDIASVLCLLTRCKFLKHLELNIKYCSMAEY 395
Query: 206 SGINSGIATAYDRSKHVVYL 265
+GI T R H++ L
Sbjct: 396 CKRPTGIGTQNQRDHHIISL 415
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,822,071
Number of Sequences: 37544
Number of extensions: 285076
Number of successful extensions: 744
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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