Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS315F05f
         (335 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.10c |rps502|rps5-2|40S ribosomal protein S5|Schizosaccha...    64   7e-12
SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces p...    61   4e-11
SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe...    27   0.77 
SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual    25   2.3  
SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr...    25   3.1  
SPBC3B9.06c |apg3||autophagy associated protein Apg3 |Schizosacc...    24   5.4  
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd...    24   5.4  
SPBC577.11 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    24   7.1  
SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces pomb...    23   9.4  

>SPAC328.10c |rps502|rps5-2|40S ribosomal protein
           S5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 203

 Score = 63.7 bits (148), Expect = 7e-12
 Identities = 36/78 (46%), Positives = 51/78 (65%)
 Frame = +1

Query: 100 AGSVVVETMSLPQAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYA 279
           A S++ + +SL +      IKLF ++    V+V D+SL DYI++     + LPH+AGR+ 
Sbjct: 2   AASIIPKEVSLDETG---HIKLFNKFPFEGVEVKDISLVDYITIGN--GQPLPHTAGRFQ 56

Query: 280 HKRFRKAQXPIVERLTNS 333
            KRFRKA+  IVERLTNS
Sbjct: 57  TKRFRKARCFIVERLTNS 74


>SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 203

 Score = 61.3 bits (142), Expect = 4e-11
 Identities = 36/74 (48%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
 Frame = +1

Query: 121 TMSLPQAADIPE---IKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYAHKRF 291
           T SL     + E   IKLF ++    V+V D+SL DYI++     + LPH+AGR+  KRF
Sbjct: 3   TSSLTPGVSLDENGSIKLFNKFPFEGVEVKDISLVDYITIGN--GQPLPHTAGRFQTKRF 60

Query: 292 RKAQXPIVERLTNS 333
           RKA+  IVERLTNS
Sbjct: 61  RKARCFIVERLTNS 74


>SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 27.1 bits (57), Expect = 0.77
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = +1

Query: 136 QAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYA 279
           + ADI  +  FGR    ++++++  +   I+V+EKYAK  P    R A
Sbjct: 7   KVADI-SLAAFGR---KELEIAENEMPGLIAVREKYAKSQPLKGARIA 50


>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 613

 Score = 25.4 bits (53), Expect = 2.3
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = -2

Query: 298 LYGNACVHTCQLNEVNILRTSL*RKCSPAETYQRLAHRSNSICRKA*FQECRRL 137
           L  N C+    LNE ++ + SL R   P++    ++ R +S+ +K+   E R L
Sbjct: 147 LLNNCCIGIANLNEDSVHKISLTRSGKPSQLV-TVSCRHSSVIQKSYGSEKRYL 199


>SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score = 25.0 bits (52), Expect = 3.1
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = +2

Query: 125 CLYHKPPTFLKSSFS 169
           C  H P TFL SSFS
Sbjct: 117 CFIHPPITFLSSSFS 131


>SPBC3B9.06c |apg3||autophagy associated protein Apg3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 275

 Score = 24.2 bits (50), Expect = 5.4
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 20  GRGYNFYLVIEKYQSWPR 73
           GR Y+ Y+V +KY   PR
Sbjct: 159 GRYYDLYIVYDKYYRTPR 176


>SPBC2G2.08 |ade9||C-1-
           tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
           ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
           trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 969

 Score = 24.2 bits (50), Expect = 5.4
 Identities = 7/22 (31%), Positives = 17/22 (77%)
 Frame = +1

Query: 199 SDMSLQDYISVKEKYAKYLPHS 264
           SDM ++ + ++K +Y+K +P++
Sbjct: 706 SDMGMEKFFNIKCRYSKLVPNT 727


>SPBC577.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 239

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 9/25 (36%), Positives = 11/25 (44%)
 Frame = -3

Query: 114 NHAACLGYVVIPVLLGHDWYFSITK 40
           NH     Y   P   GH WY  ++K
Sbjct: 53  NHDGVALYEKAPAYTGHTWYGRVSK 77


>SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = -3

Query: 195 LHIVATPSAEKLDFR 151
           +H+VA P+A +L+FR
Sbjct: 293 VHVVANPTAGELEFR 307


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,356,461
Number of Sequences: 5004
Number of extensions: 24392
Number of successful extensions: 78
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)