Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS315F05f
(335 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0317 - 16328558-16328612,16328698-16328901,16329794-163300... 91 2e-19
01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419 86 8e-18
07_01_0077 + 566895-567127,567207-567331,571204-571340,571437-57... 29 1.2
03_06_0610 + 35052455-35053429,35054936-35055511 29 1.2
06_02_0103 - 11829343-11829699,11831560-11831826,11832239-118325... 28 2.2
05_05_0116 - 22496535-22496576,22496974-22497058,22497468-224975... 27 2.9
07_03_0593 + 19808148-19808310,19809416-19809531,19810129-198102... 27 5.0
06_03_1332 - 29403320-29407804 27 5.0
01_06_1308 - 36159406-36159536,36159642-36160616,36161117-361612... 26 6.6
01_01_0115 - 856957-858055,858479-858538,858802-859583 26 6.6
02_02_0272 - 8452994-8453187,8453850-8454975 26 8.7
>11_04_0317 -
16328558-16328612,16328698-16328901,16329794-16330065,
16330152-16330220
Length = 199
Score = 91.5 bits (217), Expect = 2e-19
Identities = 43/61 (70%), Positives = 51/61 (83%), Gaps = 1/61 (1%)
Frame = +1
Query: 154 EIKLFGRWSCYDVQVSDMSLQDYISVKE-KYAKYLPHSAGRYAHKRFRKAQXPIVERLTN 330
E+KLF RWS DVQV+D+SL DY++V K+A YLPH+AGRY+ KRFRKAQ PIVERLTN
Sbjct: 10 EVKLFSRWSFEDVQVNDISLADYLAVNPTKHATYLPHTAGRYSAKRFRKAQCPIVERLTN 69
Query: 331 S 333
S
Sbjct: 70 S 70
>01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419
Length = 200
Score = 85.8 bits (203), Expect = 8e-18
Identities = 40/60 (66%), Positives = 49/60 (81%), Gaps = 1/60 (1%)
Frame = +1
Query: 157 IKLFGRWSCYDVQVSDMSLQDYISVKE-KYAKYLPHSAGRYAHKRFRKAQXPIVERLTNS 333
+KLF WS DVQV+D+SL DY++V K+A YLPH+AGRY+ KRFRKAQ P+VERLTNS
Sbjct: 12 VKLFNCWSFEDVQVNDISLADYLAVSSTKHATYLPHTAGRYSAKRFRKAQCPLVERLTNS 71
>07_01_0077 +
566895-567127,567207-567331,571204-571340,571437-571542,
571635-571885,572018-572128,572209-572320,572626-572716,
573168-573507,573678-573900,573946-574204,574274-574481,
574572-574622,574712-574870,574956-575120,575322-575399,
575732-576031,576107-576259,576871-576918,577019-577188,
577738-577852,578462-578623,578789-578893,578969-579199,
579277-579410,579484-579738,579822-580110,580214-580306,
580395-580520,580646-580897
Length = 1693
Score = 28.7 bits (61), Expect = 1.2
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +2
Query: 89 T*PRQAAWLWKPCLYHKPPTF 151
T P Q +WLW+ L H P F
Sbjct: 88 TDPSQCSWLWREVLKHNPDAF 108
>03_06_0610 + 35052455-35053429,35054936-35055511
Length = 516
Score = 28.7 bits (61), Expect = 1.2
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Frame = -3
Query: 207 HIRDLHIVATPSAEKLDFR---NVGGLW*RHGFHN-HAACLGYVVIPVLLGHDWYFSITK 40
++ ++V TP A L F GGLW +G + AAC+ V++ V+ DW+ +
Sbjct: 418 NLLSFYLVGTPVAVTLAFGARVGFGGLW--YGLLSAQAACVALVLLAVVWRTDWHLEALR 475
Query: 39 *K 34
K
Sbjct: 476 AK 477
>06_02_0103 -
11829343-11829699,11831560-11831826,11832239-11832559,
11833783-11833844,11835413-11835446,11835539-11835619
Length = 373
Score = 27.9 bits (59), Expect = 2.2
Identities = 16/57 (28%), Positives = 31/57 (54%)
Frame = +1
Query: 88 DVAEAGSVVVETMSLPQAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLP 258
++ G +VV L + +D P+ +L W+ +SDM+L+ IS ++ + Y+P
Sbjct: 215 EIVPGGRMVVSL--LVKRSDKPDTELIQPWTPAVTALSDMALRGVISKEKLDSFYIP 269
>05_05_0116 -
22496535-22496576,22496974-22497058,22497468-22497545,
22497656-22497803,22498612-22498771,22499056-22499058
Length = 171
Score = 27.5 bits (58), Expect = 2.9
Identities = 9/27 (33%), Positives = 19/27 (70%)
Frame = -3
Query: 243 VLLFNGNVVLQRHIRDLHIVATPSAEK 163
+++F+G++V+ + I+DLH T E+
Sbjct: 57 IVMFDGHIVVYKFIQDLHFFVTGGEEE 83
>07_03_0593 +
19808148-19808310,19809416-19809531,19810129-19810202,
19810286-19810335,19810498-19810592
Length = 165
Score = 26.6 bits (56), Expect = 5.0
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +1
Query: 211 LQDYISVKEKYAKYLPHSAGRYAHKRFRKAQXPIVERL 324
LQD+ V E YAKY P A A ++ A P+ R+
Sbjct: 122 LQDFKKVNEIYAKYFPAPAP--ARSTYQVAALPLNARI 157
>06_03_1332 - 29403320-29407804
Length = 1494
Score = 26.6 bits (56), Expect = 5.0
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +2
Query: 161 SFSADGVATMCKSLICLCRTTFPLKRSTQNIYLIQLAGMHT 283
+FS G T S + FP S Q +YL + GM T
Sbjct: 1268 AFSIWGCPTFLSSYYSTSLSCFPFPSSLQKMYLSDVRGMET 1308
>01_06_1308 -
36159406-36159536,36159642-36160616,36161117-36161245,
36161403-36161647,36161730-36161881,36161982-36162083
Length = 577
Score = 26.2 bits (55), Expect = 6.6
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +1
Query: 46 NRKVPIMAEENWNDDVAEAGSVVVETMSLPQAAD 147
+++VP++ E WN D E + V+T P +D
Sbjct: 159 HKEVPVIFGEWWNADTEEVVNQAVQTGGGPNVSD 192
>01_01_0115 - 856957-858055,858479-858538,858802-859583
Length = 646
Score = 26.2 bits (55), Expect = 6.6
Identities = 10/23 (43%), Positives = 18/23 (78%)
Frame = +1
Query: 208 SLQDYISVKEKYAKYLPHSAGRY 276
+LQ ++SV+ +A +PH+AGR+
Sbjct: 12 ALQVFVSVQFVFAVLVPHAAGRH 34
>02_02_0272 - 8452994-8453187,8453850-8454975
Length = 439
Score = 25.8 bits (54), Expect = 8.7
Identities = 9/21 (42%), Positives = 17/21 (80%)
Frame = +1
Query: 70 EENWNDDVAEAGSVVVETMSL 132
+ +W+DDV+E+G V+ +T+ L
Sbjct: 289 KNDWDDDVSESGWVLEKTVQL 309
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,947,957
Number of Sequences: 37544
Number of extensions: 164845
Number of successful extensions: 389
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 387
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 471517020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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