Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS315F05f
         (335 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    22   2.3  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   3.0  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   4.0  
M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee homeobox-...    21   5.3  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   5.3  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   5.3  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    20   9.2  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    20   9.2  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    20   9.2  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      20   9.2  

>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 21.8 bits (44), Expect = 2.3
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -2

Query: 211 ETYQRLAHRSNSICRKA*FQECRRLVVKTWFP 116
           + Y+RL H  N I ++  F    RL   T+ P
Sbjct: 240 QVYRRLVHAVNEIEKRLLFSHNDRLGFLTFCP 271


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.4 bits (43), Expect = 3.0
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -1

Query: 332 EFVRRSTIGHWALRKRLCAYLPAE 261
           EF R  T    AL K+LC   PAE
Sbjct: 585 EFPRSITRNATALIKKLCRDNPAE 608


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 4.0
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +1

Query: 40  FSNRKVPIMAEENWN 84
           F N+K+P+   E W+
Sbjct: 550 FKNKKLPVFLAEIWD 564


>M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H17. ).
          Length = 79

 Score = 20.6 bits (41), Expect = 5.3
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +3

Query: 129 FTTSRRHS*NQAFRQMELLRCASL*YVSAGLHFR*REVR 245
           FTT +  S  + FR+ + L  A     S+ LH    +V+
Sbjct: 16  FTTQQLLSLEKKFREKQYLTIAERAEFSSSLHLTETQVK 54


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
          protein.
          Length = 492

 Score = 20.6 bits (41), Expect = 5.3
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 2  VPNSARGRGYNFYLVIE 52
          VP+S RG  +N  LV+E
Sbjct: 25 VPSSQRGNVHNDPLVVE 41


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
          protein.
          Length = 628

 Score = 20.6 bits (41), Expect = 5.3
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 2  VPNSARGRGYNFYLVIE 52
          VP+S RG  +N  LV+E
Sbjct: 25 VPSSQRGNVHNDPLVVE 41


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 5/14 (35%), Positives = 9/14 (64%)
 Frame = -1

Query: 335 REFVRRSTIGHWAL 294
           +E +R+   GHW +
Sbjct: 68  KERIRQKAAGHWVI 81


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 5/14 (35%), Positives = 9/14 (64%)
 Frame = -1

Query: 335 REFVRRSTIGHWAL 294
           +E +R+   GHW +
Sbjct: 68  KERIRQKAAGHWVI 81


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 5/14 (35%), Positives = 9/14 (64%)
 Frame = -1

Query: 335 REFVRRSTIGHWAL 294
           +E +R+   GHW +
Sbjct: 68  KERIRQKAAGHWVI 81


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 224 FPLKRSTQNIYLIQLAGMHTSVSVK 298
           FP    + N  +  LA  HT +SVK
Sbjct: 301 FPPTPGSFNFSMAALATEHTPLSVK 325


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,779
Number of Sequences: 438
Number of extensions: 1533
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7591023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)