Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS315F03f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   2.5  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    22   4.4  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    21   7.7  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   7.7  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   7.7  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 388 IDNQPAP*CFSLKFSSSK 441
           + NQ +  CFSLKF + K
Sbjct: 537 LGNQNSEMCFSLKFKNKK 554


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 9/17 (52%), Positives = 13/17 (76%), Gaps = 1/17 (5%)
 Frame = -3

Query: 72  ITM-EIKSDENIFCNKY 25
           ITM ++KS  +I+C KY
Sbjct: 150 ITMYDLKSHNDIYCEKY 166


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = +1

Query: 157 LSFVTLKGSATTSVFVSDITTSLTGRSFAPVTVISIFCTTSIPSKTLPK 303
           L++V  K      V + DI  S+TG++ A       +C   IP   L K
Sbjct: 145 LAYVAAK--LALGVRLPDIHNSVTGKTTACFEPSLDYCVVKIPRWDLGK 191


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1

Query: 193 SVFVSDITTSLTGRSFAPVTVI 258
           S FVSD+ T L    F P  +I
Sbjct: 462 SNFVSDVVTKLRYEVFQPGDII 483


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1

Query: 193 SVFVSDITTSLTGRSFAPVTVI 258
           S FVSD+ T L    F P  +I
Sbjct: 430 SNFVSDVVTKLRYEVFQPGDII 451


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,381
Number of Sequences: 438
Number of extensions: 2459
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)