Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS315F02f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual 29 0.32
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 27 1.7
SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces po... 27 2.2
SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces pomb... 26 3.0
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p... 26 3.0
SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 3.9
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 26 3.9
SPBC27.01c |||secretory pathway protein Pga2 |Schizosaccharomyce... 25 5.2
SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces... 25 6.8
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom... 25 9.0
>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1202
Score = 29.5 bits (63), Expect = 0.32
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = -3
Query: 249 FTHIINIVGICFPIICFSRLWRLHISSSFPHLIPLN 142
F++++ I G PII F+ + +H SF +L+P++
Sbjct: 967 FSNVMPIRGARIPIIKFTGQYNIHCDLSFDNLLPIH 1002
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 27.1 bits (57), Expect = 1.7
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -1
Query: 476 CETCFSVLPT*SCPTADLSMRSAC 405
CE C+S++P SC LS+ C
Sbjct: 1253 CEKCYSLVPRMSCTFCCLSIHGLC 1276
>SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 481
Score = 26.6 bits (56), Expect = 2.2
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -1
Query: 371 FGPASYCFFLANLSASNTSSRNFAMSIASTFLP 273
+G +C +L L S T RN +++A+ +LP
Sbjct: 343 WGQEGFCAWLQELQYSYTVRRNAFLNVANKYLP 375
>SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 258
Score = 26.2 bits (55), Expect = 3.0
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = +1
Query: 175 NVKAPEPAEADDWETDPDYVNDVSEQEQRWGPAGRNVEAIDMAKLREEVFEAD 333
NV AP + W+ DV ++ +RW P GR D+A R +F AD
Sbjct: 171 NVCAPGTIWSPAWDERFKKHPDVGDRMKRWYPVGRLGTPEDVA--RAVIFLAD 221
>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 595
Score = 26.2 bits (55), Expect = 3.0
Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Frame = -3
Query: 285 NIPSGGPPSLFLFTHIINIVGICFPIICFSRLWRLHISSSFPHLIPL-NRLRKTNTFL 115
N S PP L +I C P C +W+ +S+ L+ L L TN L
Sbjct: 148 NATSSSPPPLTPILELIKQNNFCIPSPCRKLVWQSLVSAERNELLTLYATLSTTNNSL 205
>SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 498
Score = 25.8 bits (54), Expect = 3.9
Identities = 11/54 (20%), Positives = 25/54 (46%)
Frame = +1
Query: 172 TNVKAPEPAEADDWETDPDYVNDVSEQEQRWGPAGRNVEAIDMAKLREEVFEAD 333
+N+ PA +W T P Y+ + ++E + P + + + + E+F +
Sbjct: 305 SNLSRNHPATTSNWRTLPAYIQFLIKEEDKLDPCIQGLFFLLLGIAFREIFHIE 358
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 25.8 bits (54), Expect = 3.9
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = -2
Query: 460 RSCQHSRVQQLIY-PCGQLAHRICHHIQMKVSVQPHI 353
R+ VQ L+ P +LAH+IC H ++ + P+I
Sbjct: 186 RNVDAKYVQALVVAPTRELAHQICQHFEL-IKPSPNI 221
>SPBC27.01c |||secretory pathway protein Pga2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 132
Score = 25.4 bits (53), Expect = 5.2
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +1
Query: 190 EPAEADDWETDPDYVNDVSEQEQRWGPAGRNVEAIDMAKLREEVFE 327
+P E +++TD + + + E RWG + R + K REE F+
Sbjct: 68 KPKEHGEFDTDDEEEEENPDAEFRWGYSARR----RIRKQREEYFK 109
>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 844
Score = 25.0 bits (52), Expect = 6.8
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +1
Query: 169 ATNVKAPEPAEADDWETDPDYVNDVS 246
A+N PE + D + D D VN++S
Sbjct: 389 ASNTSTPEKKKFDSQKPDDDSVNEIS 414
>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 772
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 307 ILPCQLPQHSFRRAPIFVPVHSHH*HS 227
I PC L ++S AP+FV + HS
Sbjct: 38 ITPCDLLENSKSSAPLFVECNQESLHS 64
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,205,280
Number of Sequences: 5004
Number of extensions: 47792
Number of successful extensions: 134
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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