Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS315F02f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0336 + 2427017-2427121,2427585-2427662,2427889-2427960,242... 31 0.42
04_04_1613 - 34779640-34779747,34780086-34780151,34781155-347812... 31 0.74
01_01_0257 + 2097785-2097797,2098080-2098189,2098299-2098392,209... 29 1.7
09_06_0180 - 21385655-21386017,21386399-21386623,21386859-21387305 29 2.3
01_06_0610 - 30587269-30587717,30587996-30588212,30588363-305884... 29 2.3
03_06_0733 + 35825541-35826052,35826728-35826871,35828638-358287... 29 3.0
06_01_0892 - 6827510-6827590,6829348-6830412 28 4.0
03_06_0241 - 32587492-32587581,32587673-32587750,32588502-32589422 28 4.0
03_01_0454 - 3484319-3486265 28 4.0
09_02_0373 - 8098060-8098229,8098316-8098375,8098486-8098674,809... 28 5.2
04_03_0137 + 11703765-11703980,11704719-11705471 27 9.1
02_05_1303 + 35572403-35572624,35572744-35572860,35572987-355731... 27 9.1
>06_01_0336 +
2427017-2427121,2427585-2427662,2427889-2427960,
2428105-2428671,2428822-2428935,2431308-2432246
Length = 624
Score = 31.5 bits (68), Expect = 0.42
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = +1
Query: 118 KRVCFPQPVQRNKMWKAATNVKAPEPAEADDWETDPDYVNDVSEQEQR 261
+ VC P P++R+ M + N+KA + D E+ + +V E+ +R
Sbjct: 60 EEVCSPGPIERSCMDSSLLNMKAQNKGQDDKLESTRAEMGEVREENER 107
>04_04_1613 -
34779640-34779747,34780086-34780151,34781155-34781214,
34781690-34781795,34781965-34782110,34782934-34783016,
34783157-34783194,34783441-34783472,34783732-34783828,
34783951-34784234,34784752-34784904
Length = 390
Score = 30.7 bits (66), Expect = 0.74
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = -2
Query: 433 QLIYPCGQLAHRICHHIQMKVSVQPHIVSSWLICQLQIPLHVILPCQL--PQHSFRRAP 263
Q+IYPC ++ +CH I + S S++ +C L + +LP L P+ RR P
Sbjct: 163 QIIYPCMLVSAVLCHKICINFSAHCIPPSAFSVCSLYV--FAVLPNLLENPEFQNRRNP 219
>01_01_0257 +
2097785-2097797,2098080-2098189,2098299-2098392,
2098786-2098974,2099061-2099120,2099231-2099391
Length = 208
Score = 29.5 bits (63), Expect = 1.7
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -1
Query: 392 PPYPNEGFGPASYCFFLANLSASNTSSRNFAMSI 291
PPY ++G+GP +Y L L +N+ + S+
Sbjct: 150 PPYHHQGWGPYAYFHMLEELQVANSHNAESQQSV 183
>09_06_0180 - 21385655-21386017,21386399-21386623,21386859-21387305
Length = 344
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +1
Query: 385 YGGKFGV-QADRMDKSAVGHDYVGKTEKHVSQKDYAQGFGGKFGVQ 519
Y +F + + R + +G +Y+G TE + Q ++ G G FG Q
Sbjct: 86 YASEFDLLKCIRFNSQVLGVEYLGATEGEIMQWEHWSGNGEAFGAQ 131
>01_06_0610 -
30587269-30587717,30587996-30588212,30588363-30588482,
30589092-30589202,30589300-30589374,30589940-30590031,
30590121-30590302,30590479-30590570,30591179-30591283,
30591374-30591451,30591553-30591705
Length = 557
Score = 29.1 bits (62), Expect = 2.3
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -1
Query: 383 PNEGFGPASYCFFLANLSASNTS 315
PNEG G A +C F+A +A +TS
Sbjct: 406 PNEGTGCAPFCAFVAERAAQSTS 428
>03_06_0733 +
35825541-35826052,35826728-35826871,35828638-35828709,
35829232-35829739
Length = 411
Score = 28.7 bits (61), Expect = 3.0
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Frame = -2
Query: 319 PLHVILPCQLPQ--HSFRRAP-IFVPVHSHH 236
PLH + P +PQ H + AP I +P H HH
Sbjct: 45 PLHPLPPPPMPQAPHQYYPAPQITIPYHHHH 75
>06_01_0892 - 6827510-6827590,6829348-6830412
Length = 381
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/48 (29%), Positives = 20/48 (41%)
Frame = +1
Query: 364 GPKPSFGYGGKFGVQADRMDKSAVGHDYVGKTEKHVSQKDYAQGFGGK 507
G KP YG + + + S G Y G K ++ Y G+G K
Sbjct: 119 GSKPQPAYGFRPQAEEENTYGSGYGSGYGGGGRKQQEEESYGSGYGRK 166
>03_06_0241 - 32587492-32587581,32587673-32587750,32588502-32589422
Length = 362
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +1
Query: 220 DPDYVNDVSEQEQRWGPAGRNVEAIDMAKLREE 318
DPD +D E+EQ G VE ID A L+ +
Sbjct: 143 DPDSFSDDGEEEQHDEEDGEEVEQIDTAALQTD 175
>03_01_0454 - 3484319-3486265
Length = 648
Score = 28.3 bits (60), Expect = 4.0
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -2
Query: 232 HSRDLFPNHLLQQALAPSH 176
HSR++FPNH+ L SH
Sbjct: 463 HSREIFPNHVTYSILIDSH 481
>09_02_0373 -
8098060-8098229,8098316-8098375,8098486-8098674,
8098994-8099108,8099374-8099427,8099600-8099709,
8099792-8099879,8099969-8100181
Length = 332
Score = 27.9 bits (59), Expect = 5.2
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = -1
Query: 425 LSMRSACTPNLPPYPNEG--FGPASYCFFLANLSASNTSSRNFAM 297
L++ S C PYP + F P +Y F LA S +N ++ ++++
Sbjct: 258 LTVASFCYLQFFPYPYDADAFWPHAYTFQLAEASRNNNTANSYSV 302
>04_03_0137 + 11703765-11703980,11704719-11705471
Length = 322
Score = 27.1 bits (57), Expect = 9.1
Identities = 21/70 (30%), Positives = 30/70 (42%)
Frame = -2
Query: 448 HSRVQQLIYPCGQLAHRICHHIQMKVSVQPHIVSSWLICQLQIPLHVILPCQLPQHSFRR 269
H + +PCG + H +Q K S H V + + + L I PC HS R
Sbjct: 42 HGAADGVCFPCGT-STATAHLLQPKHSQPQHEV----LREGHVGLG-IWPCSATGHSSRG 95
Query: 268 APIFVPVHSH 239
AP+ V + H
Sbjct: 96 APVKVKLSGH 105
>02_05_1303 +
35572403-35572624,35572744-35572860,35572987-35573112,
35573217-35573279,35573837-35573944,35574587-35574664,
35574772-35574864,35575206-35575292,35575429-35575530,
35575617-35575736,35575839-35575901,35575974-35576119,
35576203-35576296,35576399-35576457,35576568-35576607,
35576694-35576785,35576877-35576946,35578172-35578333,
35578477-35578703,35578863-35579070,35579173-35579258,
35579450-35579541,35579674-35579870
Length = 883
Score = 27.1 bits (57), Expect = 9.1
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Frame = +1
Query: 136 QPVQRNKMWKAATNVKAPEPAEADDWETDPDYVNDVSEQEQRWG-----PAG-RNVEAID 297
+PV R+K W + E E ++ E +P D+ + Q P G + ID
Sbjct: 395 EPVDRSKHWGDLEEEEEEEEEEEEEEEEEPMEDEDMEDGMQSVDTISSTPTGVETPDVID 454
Query: 298 MAKLREEVFEADKLAKKKQYE 360
+ KL+ + E +K +K+ Y+
Sbjct: 455 LRKLQRK--EPEKQTEKQLYQ 473
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,220,444
Number of Sequences: 37544
Number of extensions: 317215
Number of successful extensions: 910
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 910
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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