Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS315F02f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110485-10|CAB60358.2| 304|Caenorhabditis elegans Hypothetical... 31 0.66
Z92812-7|CAB07281.2| 341|Caenorhabditis elegans Hypothetical pr... 28 3.5
Z83241-5|CAH10791.1| 1183|Caenorhabditis elegans Hypothetical pr... 28 3.5
Z83241-4|CAB05819.3| 1181|Caenorhabditis elegans Hypothetical pr... 28 3.5
Z81120-11|CAH10815.1| 1183|Caenorhabditis elegans Hypothetical p... 28 3.5
Z81120-10|CAB03350.3| 1181|Caenorhabditis elegans Hypothetical p... 28 3.5
U61947-13|AAB03131.3| 429|Caenorhabditis elegans Nuclear hormon... 28 3.5
AY204189-1|AAO39193.1| 429|Caenorhabditis elegans nuclear recep... 28 3.5
Z81522-8|CAB04231.2| 786|Caenorhabditis elegans Hypothetical pr... 27 6.2
U41010-3|AAF98587.1| 655|Caenorhabditis elegans Hypothetical pr... 27 6.2
AF106592-5|AAK21368.1| 525|Caenorhabditis elegans Hypothetical ... 27 6.2
AC006832-2|AAO38580.1| 366|Caenorhabditis elegans Hypothetical ... 27 6.2
AC006832-1|AAO38581.1| 376|Caenorhabditis elegans Hypothetical ... 27 6.2
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 27 8.1
S42187-1|AAB22845.1| 1475|Caenorhabditis elegans pTra2A protein. 27 8.1
M91371-1|AAA28150.1| 1475|Caenorhabditis elegans membrane protei... 27 8.1
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 27 8.1
AC024799-8|AAW88387.1| 297|Caenorhabditis elegans Hypothetical ... 27 8.1
AC024799-7|AAW88388.1| 295|Caenorhabditis elegans Hypothetical ... 27 8.1
AC006747-1|AAF60509.1| 311|Caenorhabditis elegans Hypothetical ... 27 8.1
AC006608-1|AAF39755.1| 1475|Caenorhabditis elegans Transformer :... 27 8.1
>AL110485-10|CAB60358.2| 304|Caenorhabditis elegans Hypothetical
protein Y46G5A.15 protein.
Length = 304
Score = 30.7 bits (66), Expect = 0.66
Identities = 16/53 (30%), Positives = 29/53 (54%)
Frame = +1
Query: 214 ETDPDYVNDVSEQEQRWGPAGRNVEAIDMAKLREEVFEADKLAKKKQYEAGPK 372
ET+P+ N EQ++R R +E +++AKLR ++ L + ++ E K
Sbjct: 145 ETEPEVANSTFEQQKR--ELTRELEDLELAKLRAQIHHEKALMEIEEEERKTK 195
>Z92812-7|CAB07281.2| 341|Caenorhabditis elegans Hypothetical
protein T03E6.8 protein.
Length = 341
Score = 28.3 bits (60), Expect = 3.5
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = -3
Query: 210 IICFSRLWRLHISSSFPH-LIPLNRLRKTNTFLMFYFELSLLTHKKVIDWLKYHRYILM 37
++C S + L I F H L+ L+ LR T F ELS+ K+I WL Y Y++M
Sbjct: 107 VLCKSDMVSLVIMQLFKHQLVTLSDLRYTKKF-----ELSV----KIIRWLFYFCYLMM 156
>Z83241-5|CAH10791.1| 1183|Caenorhabditis elegans Hypothetical
protein T12D8.9b protein.
Length = 1183
Score = 28.3 bits (60), Expect = 3.5
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = +1
Query: 133 PQPVQRNKMWKAATNVKAPEPA-EADDWETDPDYVNDVSEQEQRWGPAGRNVEAIDMAK 306
P+PV+++K V P+PA E+ D E + E E PA + ++ K
Sbjct: 714 PEPVKKSKRSLKKVKVAVPDPAPESKDEENEESVSEQEPESESEPEPAKKTKRSLKKVK 772
>Z83241-4|CAB05819.3| 1181|Caenorhabditis elegans Hypothetical
protein T12D8.9a protein.
Length = 1181
Score = 28.3 bits (60), Expect = 3.5
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = +1
Query: 133 PQPVQRNKMWKAATNVKAPEPA-EADDWETDPDYVNDVSEQEQRWGPAGRNVEAIDMAK 306
P+PV+++K V P+PA E+ D E + E E PA + ++ K
Sbjct: 712 PEPVKKSKRSLKKVKVAVPDPAPESKDEENEESVSEQEPESESEPEPAKKTKRSLKKVK 770
>Z81120-11|CAH10815.1| 1183|Caenorhabditis elegans Hypothetical
protein T12D8.9b protein.
Length = 1183
Score = 28.3 bits (60), Expect = 3.5
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = +1
Query: 133 PQPVQRNKMWKAATNVKAPEPA-EADDWETDPDYVNDVSEQEQRWGPAGRNVEAIDMAK 306
P+PV+++K V P+PA E+ D E + E E PA + ++ K
Sbjct: 714 PEPVKKSKRSLKKVKVAVPDPAPESKDEENEESVSEQEPESESEPEPAKKTKRSLKKVK 772
>Z81120-10|CAB03350.3| 1181|Caenorhabditis elegans Hypothetical
protein T12D8.9a protein.
Length = 1181
Score = 28.3 bits (60), Expect = 3.5
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = +1
Query: 133 PQPVQRNKMWKAATNVKAPEPA-EADDWETDPDYVNDVSEQEQRWGPAGRNVEAIDMAK 306
P+PV+++K V P+PA E+ D E + E E PA + ++ K
Sbjct: 712 PEPVKKSKRSLKKVKVAVPDPAPESKDEENEESVSEQEPESESEPEPAKKTKRSLKKVK 770
>U61947-13|AAB03131.3| 429|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 105, isoform a protein.
Length = 429
Score = 28.3 bits (60), Expect = 3.5
Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 9/68 (13%)
Frame = -2
Query: 502 HQNLERNLSAKRVFRSCQHSR------VQQLIYPCGQ-LAHRICHHI--QMKVSVQPHIV 350
H LE++++AKR+ RSC++ + + ++PC + R+ ++ +S P I
Sbjct: 80 HCRLEKSVNAKRLCRSCRYQKCLEVGMTEDALHPCRDVIGRRVRNNSSDSSPISSPPSIP 139
Query: 349 SSWLICQL 326
+ IC+L
Sbjct: 140 TPLSICKL 147
>AY204189-1|AAO39193.1| 429|Caenorhabditis elegans nuclear receptor
NHR-105 protein.
Length = 429
Score = 28.3 bits (60), Expect = 3.5
Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 9/68 (13%)
Frame = -2
Query: 502 HQNLERNLSAKRVFRSCQHSR------VQQLIYPCGQ-LAHRICHHI--QMKVSVQPHIV 350
H LE++++AKR+ RSC++ + + ++PC + R+ ++ +S P I
Sbjct: 80 HCRLEKSVNAKRLCRSCRYQKCLEVGMTEDALHPCRDVIGRRVRNNSSDSSPISSPPSIP 139
Query: 349 SSWLICQL 326
+ IC+L
Sbjct: 140 TPLSICKL 147
>Z81522-8|CAB04231.2| 786|Caenorhabditis elegans Hypothetical
protein F32B4.8 protein.
Length = 786
Score = 27.5 bits (58), Expect = 6.2
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 6/89 (6%)
Frame = +1
Query: 199 EADDWETDP-DYVNDVSEQEQRWGPAGRNVEAIDMAKLRE---EVFEADKLAKKKQYEAG 366
E + + T+P D DV + + G + + +AKL E E FE ++ KKKQ E
Sbjct: 233 EEEKFFTEPEDSDTDVEDISSKAGMPTSSFQGTSLAKLSELKPEEFEFHQIQKKKQDE-- 290
Query: 367 PKPSFGYGGKFGVQADR--MDKSAVGHDY 447
+ G++ V A + +D G Y
Sbjct: 291 -NEVVQFNGRYSVSATKYYVDNRIDGEHY 318
>U41010-3|AAF98587.1| 655|Caenorhabditis elegans Hypothetical
protein T05A12.3 protein.
Length = 655
Score = 27.5 bits (58), Expect = 6.2
Identities = 18/45 (40%), Positives = 24/45 (53%)
Frame = +1
Query: 265 GPAGRNVEAIDMAKLREEVFEADKLAKKKQYEAGPKPSFGYGGKF 399
G R+ EA MA+LRE+ +K KKK+ + S G GG F
Sbjct: 505 GDTKRSYEARRMAELREQQMR-EKERKKKKAMNRERDSRGGGGSF 548
>AF106592-5|AAK21368.1| 525|Caenorhabditis elegans Hypothetical
protein D1037.5 protein.
Length = 525
Score = 27.5 bits (58), Expect = 6.2
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = +1
Query: 160 WKAATNVKAPEPAEADDWETDPDYVNDVSEQEQRWGPAGRNVEAIDMAKLR 312
+K+ N +P P D D +Y N ++ ++++W P R + A+D +R
Sbjct: 132 FKSLDNPPSPSPGAFVD--VDSEYNNVLASEKKQWKPEERVLLALDGGGIR 180
>AC006832-2|AAO38580.1| 366|Caenorhabditis elegans Hypothetical
protein ZK355.2a protein.
Length = 366
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = -3
Query: 240 IINIVGICFPIICFSRLWRLHISSSFPHLI 151
+I ++GIC +C +R+ +LH +S HL+
Sbjct: 59 VIAVLGICTAAMCMARIAKLHTTSQ-SHLM 87
>AC006832-1|AAO38581.1| 376|Caenorhabditis elegans Hypothetical
protein ZK355.2b protein.
Length = 376
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = -3
Query: 240 IINIVGICFPIICFSRLWRLHISSSFPHLI 151
+I ++GIC +C +R+ +LH +S HL+
Sbjct: 69 VIAVLGICTAAMCMARIAKLHTTSQ-SHLM 97
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 27.1 bits (57), Expect = 8.1
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +1
Query: 385 YGGKFGVQADRMDKSAVGHDYVG-KTEK 465
Y GKFGVQ D++ K+ G + KT+K
Sbjct: 243 YAGKFGVQVDKLMKNLWGDRFFDLKTKK 270
>S42187-1|AAB22845.1| 1475|Caenorhabditis elegans pTra2A protein.
Length = 1475
Score = 27.1 bits (57), Expect = 8.1
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -1
Query: 437 PTADLSMRSACTPNLPPYPNEGFGPASY 354
P+ + +R+ PNLPP+P PAS+
Sbjct: 1357 PSMEDCIRAHSDPNLPPHPRADQYPASF 1384
>M91371-1|AAA28150.1| 1475|Caenorhabditis elegans membrane protein
protein.
Length = 1475
Score = 27.1 bits (57), Expect = 8.1
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -1
Query: 437 PTADLSMRSACTPNLPPYPNEGFGPASY 354
P+ + +R+ PNLPP+P PAS+
Sbjct: 1357 PSMEDCIRAHSDPNLPPHPRADQYPASF 1384
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 27.1 bits (57), Expect = 8.1
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +1
Query: 385 YGGKFGVQADRMDKSAVGHDYVG-KTEK 465
Y GKFGVQ D++ K+ G + KT+K
Sbjct: 243 YAGKFGVQVDKLMKNLWGDRFFDLKTKK 270
>AC024799-8|AAW88387.1| 297|Caenorhabditis elegans Hypothetical
protein Y49C4A.2 protein.
Length = 297
Score = 27.1 bits (57), Expect = 8.1
Identities = 10/38 (26%), Positives = 21/38 (55%)
Frame = -3
Query: 204 CFSRLWRLHISSSFPHLIPLNRLRKTNTFLMFYFELSL 91
CF+ W +H + F ++ L+ L F++ +F+L +
Sbjct: 165 CFNSFWSVHRTIIFTTIVILSILLAAKLFILNHFQLGV 202
>AC024799-7|AAW88388.1| 295|Caenorhabditis elegans Hypothetical
protein Y49C4A.3 protein.
Length = 295
Score = 27.1 bits (57), Expect = 8.1
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = -3
Query: 204 CFSRLWRLHISSSFPHLIPLNRLRKTNTFLMFYFELSL 91
CF+ W H + F +I L+ L F++ +F+L +
Sbjct: 168 CFNTFWSAHRTIIFTIIINLSILLSVKLFILNHFQLGV 205
>AC006747-1|AAF60509.1| 311|Caenorhabditis elegans Hypothetical
protein Y39A3A.1 protein.
Length = 311
Score = 27.1 bits (57), Expect = 8.1
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -3
Query: 165 FPHLIPLNRLRKTNTFLMFYFELSLLTHKKVIDWLK 58
F L+P N L + L LSLLT K+ DW+K
Sbjct: 85 FGQLVPHN-LSDSQKNLRCDLSLSLLTRKRTTDWVK 119
>AC006608-1|AAF39755.1| 1475|Caenorhabditis elegans Transformer : xx
animals transformedinto males protein 2, isoform a
protein.
Length = 1475
Score = 27.1 bits (57), Expect = 8.1
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -1
Query: 437 PTADLSMRSACTPNLPPYPNEGFGPASY 354
P+ + +R+ PNLPP+P PAS+
Sbjct: 1357 PSMEDCIRAHSDPNLPPHPRADQYPASF 1384
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,359,246
Number of Sequences: 27780
Number of extensions: 279407
Number of successful extensions: 871
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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