Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS315F02f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    23   1.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   3.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   4.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   4.4  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   7.7  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   7.7  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   7.7  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   7.7  

>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -1

Query: 401 PNLPPYPNEGFGPASYC 351
           P + PYPN  +    YC
Sbjct: 101 PLIAPYPNWSYNDVKYC 117


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 13/38 (34%), Positives = 15/38 (39%)
 Frame = +1

Query: 280 NVEAIDMAKLREEVFEADKLAKKKQYEAGPKPSFGYGG 393
           N+  +DM     E  E   L   K  E  P P F  GG
Sbjct: 642 NLTRVDMYANMIETMELTSLLLTKVAEDRPLPEFYIGG 679


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +1

Query: 181  KAPEPAEADDWETDPDYVNDVSEQEQRWGPAGR 279
            + P   E+D+ E+DPD +     +      AG+
Sbjct: 1775 QTPGDVESDESESDPDQLTSSRTESSNQLDAGK 1807


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +1

Query: 181  KAPEPAEADDWETDPDYVNDVSEQEQRWGPAGR 279
            + P   E+D+ E+DPD +     +      AG+
Sbjct: 1771 QTPGDVESDESESDPDQLTSSRTESSNQLDAGK 1803


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 353 CFFLANLSASNTSS 312
           C+F ++LS S TSS
Sbjct: 308 CYFSSDLSESETSS 321


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +2

Query: 182 RRQSLLKQMIGKQIPTMLMM 241
           R   L++++  K +PT+LMM
Sbjct: 329 RMPQLIRKIFLKYLPTILMM 348


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 4/7 (57%), Positives = 6/7 (85%)
 Frame = +3

Query: 432 CWTRLCW 452
           CW ++CW
Sbjct: 489 CWWKICW 495


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 4/7 (57%), Positives = 6/7 (85%)
 Frame = +3

Query: 432 CWTRLCW 452
           CW ++CW
Sbjct: 542 CWWKICW 548


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,742
Number of Sequences: 438
Number of extensions: 3307
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)