Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS315F01f
         (442 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po...    31   0.079
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha...    29   0.32 
SPAC23H4.10c |thi4||thiamine-phosphate dipyrophosphorylase/hydro...    27   1.3  
SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces pomb...    27   1.7  

>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 507

 Score = 31.1 bits (67), Expect = 0.079
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -2

Query: 405 HNTKYNQYLKMSTTTCNCNSRDRVVYGGNSADSTRE 298
           +++ YN+   M T++C+C+S  +  YGGN A    E
Sbjct: 47  YSSTYNEITNMDTSSCSCSSTPK-SYGGNLAPFDEE 81


>SPAC4F8.11 |||WD repeat protein, human WDR24
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 846

 Score = 29.1 bits (62), Expect = 0.32
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -2

Query: 405 HNTKYNQYLKMSTTTCNCNSRDRVVYGGNSA 313
           HN  +N + + S T+ +  SR+ V+  GNS+
Sbjct: 617 HNEMFNSFHRSSVTSASIKSREAVLSAGNSS 647


>SPAC23H4.10c |thi4||thiamine-phosphate
           dipyrophosphorylase/hydroxyethylthiazole kinase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 518

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -3

Query: 200 TPRETARPLDTMVKSPVFLTSTRGSLHLSKRPKTLL 93
           TPRETA+ L  ++ +P      R SL     PK LL
Sbjct: 207 TPRETAKELRNLIATPPCFAQARSSL---TTPKDLL 239


>SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = -2

Query: 345 RDRVVYGGNSADSTREQWFFQPAKYENDVLFFIYN 241
           R R+V G ++A  + + W F   +Y   ++F+++N
Sbjct: 162 RQRIVVGKHAAHFSLDHWIF-VVEYYAPIVFYVFN 195


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,494,999
Number of Sequences: 5004
Number of extensions: 26211
Number of successful extensions: 74
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)