Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS315F01f
         (442 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          24   0.85 
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   3.4  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   7.9  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   7.9  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   7.9  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   7.9  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   7.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   7.9  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.8 bits (49), Expect = 0.85
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +1

Query: 61  NARLLHYS*TYNSVFGRLER 120
           N   +HY+  Y+S++GR +R
Sbjct: 592 NQAAIHYNLPYSSLYGRFKR 611


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +1

Query: 118 RCNEPRVDVRKTGDFTIVSNGLAVSRG 198
           +CN+ + D+ +TG      +G   SRG
Sbjct: 67  QCNDKKTDIEETGRGKGRGHGKGGSRG 93


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 53  FLRMLVYYIIHEHITVSLVV 112
           F+R + YY+I  +I   L+V
Sbjct: 216 FVRSMGYYLIQIYIPSGLIV 235


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 53  FLRMLVYYIIHEHITVSLVV 112
           F+R + YY+I  +I   L+V
Sbjct: 216 FVRSMGYYLIQIYIPSGLIV 235


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 131 GSLHLSKRPKTLLYVHE*CNKRAF 60
           G L+L  RP   +YV +  NK AF
Sbjct: 7   GILYLFDRPSEPVYVPKGDNKVAF 30


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 53  FLRMLVYYIIHEHITVSLVV 112
           F+R + YY+I  +I   L+V
Sbjct: 155 FVRSMGYYLIQIYIPSGLIV 174


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -2

Query: 273 YENDVLFFIYNRQFNDA 223
           Y+N +++ IY R F D+
Sbjct: 27  YKNALVYQIYPRSFQDS 43


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 301 GAMVLPARQVRKRR 260
           G   +P R++RKRR
Sbjct: 257 GTTTIPTRRLRKRR 270


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,129
Number of Sequences: 438
Number of extensions: 2200
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11450997
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)