Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS315E05f
         (495 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   1.3  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     23   1.3  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   2.4  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   7.2  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -1

Query: 162 Y*IIQSFWAIFFNPW 118
           Y ++++ W+ F NPW
Sbjct: 384 YVVLETEWSSFINPW 398



 Score = 21.4 bits (43), Expect = 5.4
 Identities = 11/46 (23%), Positives = 22/46 (47%)
 Frame = +1

Query: 268 LACAKQMYTPQQFSSMVLELNASDDRGIGIVRGQILSFASTRTIFK 405
           L+ ++ M  PQQ   M L ++       G++   ++   ST  ++K
Sbjct: 814 LSSSQPMQPPQQNPYMFLPVSYMSTTMAGVIYPPVIGTPSTGMMYK 859


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -1

Query: 162 Y*IIQSFWAIFFNPW 118
           Y ++++ W+ F NPW
Sbjct: 90  YVVLETEWSSFINPW 104


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +1

Query: 364 GQILSFASTRTIFKAGPKLIILDEADAM 447
           G++L F     +  +  + ++LDEAD M
Sbjct: 332 GRLLDFVEKGRVKFSSVQFLVLDEADRM 359


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = -1

Query: 168 MRY*IIQSFWAIFFNPWQILACFPNSHIVFLTVFLNRF*YVSTDTLLKTKKTIY 7
           M+  II +   + F  WQ  A   N +    +  LN   Y    TLLK K+ ++
Sbjct: 1   MKMRIITALGFLLF--WQNSASLENDNEFGFSYLLNCKNYDHPTTLLKLKRYLF 52


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,175
Number of Sequences: 438
Number of extensions: 2605
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13667319
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)