Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS315E01f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   1.9  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   2.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.5  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   5.8  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   7.7  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    21   7.7  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 266 DQAKRLPPPPPIKTMTYT 319
           D  + LPPPPPI+   +T
Sbjct: 370 DLDEPLPPPPPIRGGEWT 387


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +2

Query: 257 DEDDQAKRLPPPPP 298
           D D   K  PPPPP
Sbjct: 334 DSDTPPKPAPPPPP 347


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 19/68 (27%), Positives = 25/68 (36%), Gaps = 3/68 (4%)
 Frame = +2

Query: 128  VFVPDNML--KNRSKSRSVDHGFSPPFDLESLRSKVEGRFDAVHRDE-DDQAKRLPPPPP 298
            V VP N L   N + S         P   E + S ++  +  + R     Q    PPPPP
Sbjct: 1304 VTVPGNNLIATNTTVSSGSSEDHRRPLS-EHIYSSIDSDYSTLERTAWRQQQPPPPPPPP 1362

Query: 299  IKTMTYTV 322
                 Y V
Sbjct: 1363 SSGQAYLV 1370


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -3

Query: 201 KGGENP*STERLFDLFFSMLSGTNTF 124
           + GENP  T  +FD    + S   TF
Sbjct: 408 RNGENPIDTCEMFDSVSILFSDVVTF 433


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 164 KSRSVDHGFSPPFDLESLRSK 226
           KS   DH  + PFD++  R K
Sbjct: 61  KSGEFDHTKNYPFDVDRWRDK 81


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 189 SPRLSTWNLCGLKSKADSTQCIEMKTTKL 275
           SP LS     GLK  +D   C+E  +T +
Sbjct: 57  SPLLSCACPDGLKLLSDGLMCVEKVSTTI 85


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,621
Number of Sequences: 438
Number of extensions: 3448
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)