Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS315D06f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces pom...    29   0.32 
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti...    27   2.2  
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    25   6.8  
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo...    25   9.0  

>SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 29.5 bits (63), Expect = 0.32
 Identities = 12/43 (27%), Positives = 25/43 (58%)
 Frame = -2

Query: 499 ALKVLCFQHYSILSGKIVCLEPSSSILSYNRRFSHLLCYGHTC 371
           A K +   H  ILS K++C++PS+ + +++ + +  L +   C
Sbjct: 247 ASKQITNYHRRILSSKVICIDPSTGLYAFDLQGTAFLWHQVRC 289


>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
           subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = -2

Query: 517 VDHTPLALKVLCFQHYSIL---SGKIVCLEPSSSILSYNRR 404
           +D   LALKV     Y      +G++ CL  SSS+ SY R+
Sbjct: 672 LDGRQLALKVSANSVYGFTGATNGRLPCLAISSSVTSYGRQ 712


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1372

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +1

Query: 460  IKSNNAENITLSKQEE 507
            +KSNNAEN   SK EE
Sbjct: 1280 VKSNNAENSGSSKNEE 1295


>SPBC4.03c |||COPII-coated vesicle component Sfb3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
 Frame = -2

Query: 388 CYGHTCAF--FLQANDFWTWNVCGSHD 314
           C G+   F  F  A+  WT N+CGS +
Sbjct: 219 CRGYINPFIQFTMASSKWTCNLCGSEN 245


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,865,073
Number of Sequences: 5004
Number of extensions: 33632
Number of successful extensions: 74
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)