Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS315D06f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1815 - 40064351-40064887,40064987-40065634,40065834-400658...    35   0.034
11_01_0553 - 4368233-4368320,4368427-4368514,4368595-4368668,436...    28   5.2  
06_03_0674 + 23422004-23422552,23423295-23423369,23424360-234244...    27   9.1  

>01_06_1815 -
           40064351-40064887,40064987-40065634,40065834-40065890,
           40065921-40065941,40066714-40066941
          Length = 496

 Score = 35.1 bits (77), Expect = 0.034
 Identities = 30/100 (30%), Positives = 46/100 (46%)
 Frame = -2

Query: 502 LALKVLCFQHYSILSGKIVCLEPSSSILSYNRRFSHLLCYGHTCAFFLQANDFWTWNVCG 323
           +A+  +CF    IL+   +  + SS+  S      +L+  G  C F   A  F T N  G
Sbjct: 344 IAVTRMCFGILMILAIAWLAFQRSSTTGSNMPITFNLILLGIICGF---AGRFCT-NTLG 399

Query: 322 SHDFPWI*CWQNLCLVNLIHLMKN*ILHCVYHNLYLPLTV 203
                W+  W+ LC    IHL+ N     +YH L+ P++V
Sbjct: 400 GDGNTWLMYWEVLCS---IHLLGNLFPSLLYHVLHGPISV 436


>11_01_0553 -
           4368233-4368320,4368427-4368514,4368595-4368668,
           4369000-4369160,4369233-4369322,4369406-4369480,
           4369569-4369640,4369719-4369891,4369964-4370078,
           4370274-4370387,4370582-4370661,4370755-4370842,
           4370941-4370997,4371111-4371176,4371254-4371349,
           4371459-4371566,4371941-4372039,4372108-4372227,
           4372399-4372437,4372940-4373026,4373276-4373347,
           4373443-4373509,4374455-4374546,4374631-4374708,
           4374785-4374922,4375029-4375164,4375306-4375468,
           4375690-4375849,4375950-4376056,4376149-4376259,
           4377850-4378159
          Length = 1107

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = -2

Query: 517 VDHTPLALKVLCFQHYSILS---GKIVCLEPSSSILSYNRR 404
           +D   LALK+     Y       G++ CLE SSS+ SY R+
Sbjct: 694 LDGRQLALKISANSVYGFTGATVGQLPCLEISSSVTSYGRQ 734


>06_03_0674 +
           23422004-23422552,23423295-23423369,23424360-23424443,
           23424749-23424991,23425348-23425515,23425608-23425727,
           23426372-23427016
          Length = 627

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +2

Query: 221 KIMIHAVKYLVLHQVDQVHQA*VLPALNPRKVV*SANVPSPKV 349
           K+ + A+KYLV+ + D++      P +  RK+V   N+P   V
Sbjct: 262 KVSLEAIKYLVMDEADRMLDMGFEPQI--RKIVERMNMPRKSV 302


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,024,312
Number of Sequences: 37544
Number of extensions: 188441
Number of successful extensions: 352
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 352
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)