Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS315D03f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.16 |||ATP-citrate synthase subunit 2 |Schizosaccharomy...    30   0.24 
SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito...    27   1.3  
SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr 2||...    27   2.2  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    25   6.8  
SPAC5D6.09c |mug86||acetate transporter |Schizosaccharomyces pom...    25   9.0  
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi...    25   9.0  

>SPAC22A12.16 |||ATP-citrate synthase subunit 2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 492

 Score = 29.9 bits (64), Expect = 0.24
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +3

Query: 177 DYMMMIFSFYFD--EAALGTNPLSVVAPASKGESFYLDMA 290
           D+++ ++S Y D     L  NPL V+  A   + FYLD+A
Sbjct: 213 DFIIRLYSVYVDCQFTYLEINPLVVIPTAKGADVFYLDLA 252


>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
           pyrophosphate synthase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 920

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -1

Query: 464 PYIXDVFSPPP*RHEAARFEGQFCVLRYFTVRSLCPTQWQRFAFTT 327
           P + +V +PPP   EA R +    VLR+       P Q  +F+FT+
Sbjct: 370 PSVQEVLNPPPRESEAWRLKSLVGVLRH---ADRTPKQKFKFSFTS 412


>SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 625

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 16/59 (27%), Positives = 23/59 (38%)
 Frame = +1

Query: 247 LLPLRKENPSIWTWRLQQLLLAR*KCNVVKANLCHWVGHRDRTVK*RKTQNWPSKRAAS 423
           L+P        WTWR++  LL +    + K N   W    DR      T    + R+ S
Sbjct: 505 LVPADYNQKEAWTWRVEGGLLPQWVRRLFKGNRRFWEDPDDRKAMDNATLEMATSRSYS 563


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +3

Query: 6    EFGTRICVTL*LLKLTYFHDFFYGSWCLSSVSLNR 110
            E G+ + +   LL+   F D  YG++CL+ +   R
Sbjct: 1054 ETGSAVTLESILLQCVMFGDKIYGAYCLACLMAQR 1088


>SPAC5D6.09c |mug86||acetate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 304

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = -1

Query: 416 ARFEGQFCVLRYFTVRSLCPTQWQRFAFTTLHFYLANSNCCSRHVQI 276
           A FE     LRY    +  P     FAFTT  F L+  N  + HV++
Sbjct: 76  ADFEPNIHRLRYINYGNPAPFGLSAFAFTT--FLLSLFNVNAGHVKV 120


>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
           reductase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1053

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +1

Query: 241 QSLLPLRKENPSIWTWRLQQLLLAR*KCNVVK 336
           Q +LP  +E+   W+W LQ  L+AR   N +K
Sbjct: 166 QRILPAIREHGISWSWLLQ--LIARTWMNTLK 195


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,944,496
Number of Sequences: 5004
Number of extensions: 36221
Number of successful extensions: 78
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)