Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS315D02f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    27   1.3  
SPAC222.08c |||imidazoleglycerol-phosphate synthase |Schizosacch...    27   1.7  
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||...    26   3.9  
SPBC365.09c |||human KIN homolog|Schizosaccharomyces pombe|chr 2...    26   3.9  
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |...    25   5.2  
SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces p...    25   6.8  
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    25   6.8  
SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr 2|...    25   9.0  
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce...    25   9.0  
SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9 |Schizosacchar...    25   9.0  

>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +2

Query: 185 GGRAHSPRGVKWLLEPIDIYN 247
           GG  H P  V WLL P DIY+
Sbjct: 235 GGPLHDPNTVMWLLRP-DIYS 254


>SPAC222.08c |||imidazoleglycerol-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 234

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = -1

Query: 149 LLGEILRISSWECAALEAG--LGTVFSPELSATLSWLLKIWTNSYLVP 12
           +L  I+   + E  A+E G  LGT F PEL+A   W  + W    ++P
Sbjct: 182 VLATIVHEGNKEIVAVEQGPFLGTSFHPELTADNRW-HEWWVKERVLP 228


>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 948

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -3

Query: 513 IFCDPIQNLMERSRKISMCKQNHVKDAFFYVEV 415
           IFC PI +LM  S  + + +     DA+ +  V
Sbjct: 322 IFCVPINSLMANSDSVDILELTRNTDAYIWYSV 354


>SPBC365.09c |||human KIN homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 304

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -2

Query: 124 VHGNVRRWKLASGLCSVLNYRPLCR 50
           VH N  RW   S  C  L  + +CR
Sbjct: 105 VHMNATRWHTLSEFCKFLGRQGMCR 129


>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
 Frame = +2

Query: 2   VPNSARGKSSSKSLEATTKWPIVQD*TQSRGQLPTPHIPMN--LYEEF 139
           VP SA GKS       T    +  D   S+  L TP   ++  LYE +
Sbjct: 372 VPPSAGGKSQGPQASCTEAVSLTADIDLSKSSLATPRPKLSSLLYENY 419


>SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 489

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +1

Query: 25  EFVQIFRSHDKVADSSGLNTVPRPASNAAHSH 120
           EF+ IF   D++A    L+   +P  ++ H H
Sbjct: 392 EFIPIFSEVDRIAFHKFLSENTKPEDSSIHKH 423


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
 Frame = +1

Query: 40  FRSHDKVADSSGLNTVPRPASNAA----HSHELIR--RISPSNLQKIPFF 171
           F S+D++A S  L  +PR   N+     HSH L+   +  PS+   +P F
Sbjct: 35  FHSYDELAFSRRLYNLPRTLLNSRYYSNHSHGLVHGSKSPPSSQFLVPSF 84


>SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 272

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -2

Query: 370 VPPPHLFLP*SSNA 329
           VPPPHL LP +S++
Sbjct: 255 VPPPHLILPTASSS 268


>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 369 FHRPTYFCREAVMRFGLKGGVAVVTI 292
           F +P+ F  E V+   L GG AVV +
Sbjct: 87  FKKPSSFTGEDVVELQLHGGTAVVDV 112


>SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 524

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -2

Query: 118 GNVRRWKLASGLCS 77
           GN+R WK+A GL S
Sbjct: 433 GNIRLWKIAEGLRS 446


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,361,705
Number of Sequences: 5004
Number of extensions: 51226
Number of successful extensions: 95
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)