Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS315D02f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0684 + 6009474-6009582,6009715-6009904,6011412-6011483,601...    30   0.98 
03_02_0860 - 11864510-11864732,11864867-11865191,11866213-11867779     30   0.98 
10_08_0371 + 17265691-17265788,17265873-17265971,17266586-172666...    29   3.0  
01_05_0723 + 24607800-24608357,24609616-24610158,24610281-246106...    27   6.9  
03_02_0859 - 11853928-11854138,11854225-11854683,11854760-118549...    27   9.1  

>08_01_0684 +
           6009474-6009582,6009715-6009904,6011412-6011483,
           6011644-6011715,6011806-6011877,6012163-6012234,
           6012283-6012354,6012479-6012550,6012634-6012705,
           6013112-6013183,6013275-6013349,6013453-6013524,
           6013619-6013684,6013752-6013777,6014179-6014558,
           6014642-6014840,6014910-6015068,6015569-6015613,
           6015742-6015973,6016053-6016203,6016306-6016665
          Length = 879

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -1

Query: 428 FMLRYWFTGGRTSYESARIGSTAPPISAVKQ 336
           ++  + F GG TSY ++  GST P +S  K+
Sbjct: 829 YITEWQFRGGNTSYVTSHSGSTTPKLSRQKE 859


>03_02_0860 - 11864510-11864732,11864867-11865191,11866213-11867779
          Length = 704

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +2

Query: 113 IPMNLYEEFHQVIYKKYLFFIA 178
           IP NLYE+FH+V Y  +L   A
Sbjct: 130 IPRNLYEQFHRVAYVYFLILAA 151


>10_08_0371 +
           17265691-17265788,17265873-17265971,17266586-17266628,
           17267250-17267321,17267400-17267495,17267609-17267842,
           17267914-17268097,17268247-17268358,17268447-17268533,
           17268703-17268841,17269628-17269718,17270045-17270154,
           17270309-17270413,17270982-17271055,17271379-17271454,
           17271786-17272022,17272419-17272490,17273082-17273153,
           17273240-17273304,17273306-17273383,17273384-17273486,
           17273769-17273858,17274873-17274980,17275063-17275113,
           17276126-17276203,17276284-17276346,17276944-17277140,
           17277243-17277312,17277640-17277828
          Length = 1030

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -1

Query: 80  FSPELSATLSWLLKIWTNSYLVP 12
           FSP L   + W L  W  +YLVP
Sbjct: 534 FSPRLMEAVIWFLARWVATYLVP 556


>01_05_0723 +
           24607800-24608357,24609616-24610158,24610281-24610697,
           24610804-24611244
          Length = 652

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 406 LGVGPLMSPHG*VPPPHLFLP*SSNAFRFEGWG 308
           +G   ++ P G   PPH FLP  +  FR +  G
Sbjct: 513 MGTTYILQPDGAASPPHPFLPEGAALFRLDPEG 545


>03_02_0859 -
           11853928-11854138,11854225-11854683,11854760-11854991,
           11855064-11855187,11855276-11855960,11856429-11856735,
           11856832-11858188
          Length = 1124

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 101 PTPHIPMNLYEEFHQVIYKKYL 166
           P   +P NL+E+FH++ Y  +L
Sbjct: 55  PLTFLPRNLFEQFHRLAYVYFL 76


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,995,256
Number of Sequences: 37544
Number of extensions: 368421
Number of successful extensions: 802
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)