Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS315D02f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28732-6|AAB04903.2|  489|Caenorhabditis elegans Hypothetical pr...    28   3.5  
U28732-5|AAT92075.1|  495|Caenorhabditis elegans Hypothetical pr...    28   3.5  
AC084158-29|AAL27264.2|  666|Caenorhabditis elegans Yeast smf (d...    28   4.7  
Z81453-3|CAB03791.1|  480|Caenorhabditis elegans Hypothetical pr...    27   6.2  
AL032630-9|CAA21565.1|  369|Caenorhabditis elegans Hypothetical ...    27   8.1  

>U28732-6|AAB04903.2|  489|Caenorhabditis elegans Hypothetical
           protein F45E1.7a protein.
          Length = 489

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = +1

Query: 34  QIFRSHDKVADSSGLNTVPRPASNAAHSHELIRRISPSN 150
           QI RS D    S+  NT+P  A N A SHE + + SP +
Sbjct: 325 QINRSED--IPSTHSNTLPSVAVNTASSHEDVGKSSPKS 361


>U28732-5|AAT92075.1|  495|Caenorhabditis elegans Hypothetical
           protein F45E1.7b protein.
          Length = 495

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = +1

Query: 34  QIFRSHDKVADSSGLNTVPRPASNAAHSHELIRRISPSN 150
           QI RS D    S+  NT+P  A N A SHE + + SP +
Sbjct: 331 QINRSED--IPSTHSNTLPSVAVNTASSHEDVGKSSPKS 367


>AC084158-29|AAL27264.2|  666|Caenorhabditis elegans Yeast smf
           (divalent cation transporter)homolog protein 3 protein.
          Length = 666

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +2

Query: 113 IPMNLYEEFHQVIYKKYLFFIA*LGGRAHSPRGVKWLLEPIDIYNVNAP 259
           IP+ ++     +I+  YL +   +     SP   KWL EPI  ++ +AP
Sbjct: 596 IPITIFCAIFYIIFIAYLTYYCLVAMEFISPIQTKWLAEPI-YHDFDAP 643


>Z81453-3|CAB03791.1|  480|Caenorhabditis elegans Hypothetical
           protein B0250.4 protein.
          Length = 480

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 363 RPTYFCREAVMRFGLKGGV 307
           RPTYFC    MRFG +  +
Sbjct: 266 RPTYFCDRCPMRFGTESAL 284


>AL032630-9|CAA21565.1|  369|Caenorhabditis elegans Hypothetical
           protein Y62H9A.9 protein.
          Length = 369

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -1

Query: 161 IFCRLLGEILRISSWECAALEAGLGTVFSPELSATLSWLLKI 36
           +F RLLG+   IS WE A    G G    P++ A +  L K+
Sbjct: 265 VFERLLGKEYTISGWENAIESLGTG---KPKMRAEIKELRKV 303


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,192,985
Number of Sequences: 27780
Number of extensions: 292906
Number of successful extensions: 573
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)