Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS315D01f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.06 |||cargo receptor for soluble proteins |Schizosacchar...    28   0.97 
SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    27   1.3  
SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces...    26   3.9  
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe...    26   3.9  
SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe...    25   5.2  
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1...    25   6.8  
SPAC5D6.04 |||auxin family transmembrane transporter |Schizosacc...    25   6.8  
SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1 |Schiz...    25   9.0  

>SPCC970.06 |||cargo receptor for soluble proteins
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 302

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 10/51 (19%), Positives = 31/51 (60%)
 Frame = +2

Query: 44  IRRITQLEQRIKWL*DKKRCQY*LRPVLAVLAPEAVIAGVLVILLRKQKSF 196
           IR +TQ  +++ ++ D +R ++   P+L  +    ++ G  +++ +K++++
Sbjct: 71  IRIVTQWPEQVSYMRDYRRFRFGTAPLLLFVCVVLMLVGSTLVVFKKRQAY 121


>SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = +3

Query: 78  NGFETKNGANTDYGRSSRFLRRKQ*SQEF 164
           N F+ + G++T   RSS +L RK+ +Q+F
Sbjct: 276 NSFDLRKGSSTSLKRSSMYLARKE-NQDF 303


>SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 179 RKQKSFKMLRNIIQHTTWIYISPSRIAKWPYINFS 283
           R+ K F+ML NI+ H    Y  P    K+   +FS
Sbjct: 43  RRYKDFEMLHNILSHDYNGYAIPPLPRKYTVSSFS 77


>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 364 KWTHPDYGTKKYV 326
           +W HPDY  K+Y+
Sbjct: 537 QWVHPDYRNKEYI 549


>SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -3

Query: 408 DLFVVKSQHRRYELKNGR 355
           D+  +K Q  RYELKNGR
Sbjct: 318 DVVNIKPQVDRYELKNGR 335


>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -2

Query: 187 LLPQENHQNSCDHCFRRKNREDRP*SVL 104
           L PQ+    S  H  R +N EDRP S+L
Sbjct: 420 LNPQKETSRSKTHTSRGENVEDRPQSLL 447


>SPAC5D6.04 |||auxin family transmembrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 452

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +1

Query: 436 CITICNKNRKSFSLVESLGTIIK 504
           CIT  N N    +LV SL T +K
Sbjct: 117 CITFQNSNSLPLALVSSLATTVK 139


>SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 676

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/40 (25%), Positives = 20/40 (50%)
 Frame = +1

Query: 220 TYDMDLHISFEDCEVAIHKFFNNDLVGAMNIMRPWARTSL 339
           TY  D+H  F+    ++ +F N   +G  N+++    T +
Sbjct: 31  TYSDDVHTLFDVFRHSVKQFGNKKAMGYRNLVKEHVETKM 70


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,295,555
Number of Sequences: 5004
Number of extensions: 48055
Number of successful extensions: 142
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)