Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS315D01f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0807 - 6069998-6071326 29 3.0
05_03_0142 - 8866316-8866608,8867652-8867886,8868801-8869076,886... 29 3.0
11_06_0233 + 21565233-21566053,21566840-21567890,21568075-215687... 28 5.2
07_01_0736 - 5600201-5600374,5600455-5600563,5601075-5601196,560... 27 6.9
05_03_0089 - 8327044-8327142,8327238-8327306,8327413-8327504,832... 27 6.9
02_05_0967 - 33148283-33148524,33148602-33148881,33148959-331491... 27 6.9
11_06_0621 + 25587476-25587604,25588230-25588423,25588800-255888... 27 9.1
09_04_0745 + 19884868-19886000,19886110-19886309,19886422-198866... 27 9.1
09_01_0144 - 2158924-2158962,2159180-2159315,2159393-2159499,215... 27 9.1
02_05_0114 + 25958834-25961296 27 9.1
>06_01_0807 - 6069998-6071326
Length = 442
Score = 28.7 bits (61), Expect = 3.0
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -3
Query: 180 LRRITRTPAITASGARTARTGRSQYWHRFLSQS 82
LRR GAR+AR GRS W F++++
Sbjct: 313 LRRTAVREGRVGGGARSARIGRSDRWPSFIART 345
>05_03_0142 -
8866316-8866608,8867652-8867886,8868801-8869076,
8869166-8869292,8869869-8870116,8870189-8871104,
8871980-8872086,8872562-8872930
Length = 856
Score = 28.7 bits (61), Expect = 3.0
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = -2
Query: 511 WAFL*WYRDSPLRRNSCDFCYKL*CTASVQQLTD 410
W++L +RD+P + C FC L C +QQ+++
Sbjct: 436 WSYL--HRDNPEGCSLCPFCLVLPCLGKLQQISN 467
>11_06_0233 +
21565233-21566053,21566840-21567890,21568075-21568758,
21568927-21569019,21571815-21571835
Length = 889
Score = 27.9 bits (59), Expect = 5.2
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = -3
Query: 360 GRTQTMVQRSTCPWSHYVHS-PN*VIIEKFMYGHFAILEGD 241
G T V+ W H VH+ PN +I +G F + + D
Sbjct: 819 GETAKQVEEVVVAWEHTVHAHPNRPVISVHRFGEFLMKKDD 859
>07_01_0736 -
5600201-5600374,5600455-5600563,5601075-5601196,
5602859-5602935,5603349-5603487,5604306-5604618,
5605084-5605394,5607245-5609141,5609239-5609374,
5609519-5609607,5610424-5610507,5611112-5611191,
5611312-5611446,5612340-5612585
Length = 1303
Score = 27.5 bits (58), Expect = 6.9
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +1
Query: 262 VAIHKFFNNDLVGAMNIMRPWARTSLYHSLGASIFEFIPA 381
V +H N D++ + RPW S HSL S F+PA
Sbjct: 827 VPLHDRANADIIVLGD--RPWLLQSARHSLAYSSISFLPA 864
>05_03_0089 -
8327044-8327142,8327238-8327306,8327413-8327504,
8327932-8329042
Length = 456
Score = 27.5 bits (58), Expect = 6.9
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +2
Query: 179 RKQKSFKMLRNIIQHTTWIYISPSRIAKWPYINFSIMT 292
R+++ + LRN+ W+ I+ SR AKW Y F +T
Sbjct: 15 RERREEERLRNV-NLDDWLPITSSRTAKWYYSAFHNVT 51
>02_05_0967 -
33148283-33148524,33148602-33148881,33148959-33149151,
33149244-33149324,33149395-33149520,33149758-33150137,
33150367-33150394,33150816-33150979,33151920-33152039,
33152168-33152416
Length = 620
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = -1
Query: 482 STKEKLLRFLLQIVMHCFSATIDRPICSWSKVNIA 378
S EK F LQ+ +H + + R C W IA
Sbjct: 72 SCPEKFRNFQLQVAIHSMRSNLTRKCCLWRHKYIA 106
>11_06_0621 +
25587476-25587604,25588230-25588423,25588800-25588874,
25589434-25591852
Length = 938
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = -1
Query: 407 ICSWSK-VNIAGMNSKMDAPRLWYKEVRAHGLIMFIAPTKSLLKNLCMA 264
+ S+SK ++I N MD LW+ ++ GL + + L+ C A
Sbjct: 727 VISYSKLISIYCQNGDMDKAHLWFHDMVQRGLSVDVIVYTILMNGYCKA 775
>09_04_0745 +
19884868-19886000,19886110-19886309,19886422-19886666,
19886880-19887668
Length = 788
Score = 27.1 bits (57), Expect = 9.1
Identities = 18/45 (40%), Positives = 24/45 (53%)
Frame = +2
Query: 113 LRPVLAVLAPEAVIAGVLVILLRKQKSFKMLRNIIQHTTWIYISP 247
L PV AVLA AV+A LV LL +++ HT + +SP
Sbjct: 149 LLPVAAVLA--AVLAAALVYLLTRRRRCSKGEPHAAHTKAVLLSP 191
>09_01_0144 -
2158924-2158962,2159180-2159315,2159393-2159499,
2159594-2160055,2162755-2162836,2164222-2164346,
2164555-2164623,2164935-2165056,2165823-2165856
Length = 391
Score = 27.1 bits (57), Expect = 9.1
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +1
Query: 205 TEYHPTYDMDLHISFEDCEV 264
T YHP +D+D F++CE+
Sbjct: 110 TSYHPPHDLDGVSGFKECEL 129
>02_05_0114 + 25958834-25961296
Length = 820
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = -1
Query: 407 ICSWSK-VNIAGMNSKMDAPRLWYKEVRAHGLIMFIAPTKSLLKNLCMA 264
+ S+SK ++I N MD LW+ ++ GL + + L+ C A
Sbjct: 609 VISYSKLISIYCQNGDMDKAHLWFHDMVQRGLSIDVIVYTILMNGYCKA 657
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,545,459
Number of Sequences: 37544
Number of extensions: 299661
Number of successful extensions: 722
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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