Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS315D01f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23511-5|AAC46794.1| 578|Caenorhabditis elegans Hypothetical pr... 43 1e-04
Z82058-2|CAB04863.1| 224|Caenorhabditis elegans Hypothetical pr... 29 2.0
AF040659-3|AAK39392.1| 919|Caenorhabditis elegans Hypothetical ... 28 4.7
AF040659-2|AAK39393.1| 873|Caenorhabditis elegans Hypothetical ... 28 4.7
Z82260-5|CAB05133.1| 194|Caenorhabditis elegans Hypothetical pr... 27 8.1
U61955-4|AAC24407.1| 772|Caenorhabditis elegans Zygotic epiderm... 27 8.1
U61955-3|AAC24406.1| 775|Caenorhabditis elegans Zygotic epiderm... 27 8.1
U61955-2|AAM97993.1| 777|Caenorhabditis elegans Zygotic epiderm... 27 8.1
AF057568-1|AAC33438.1| 772|Caenorhabditis elegans kinesin-like ... 27 8.1
AF057567-1|AAC33437.1| 775|Caenorhabditis elegans kinesin-like ... 27 8.1
>U23511-5|AAC46794.1| 578|Caenorhabditis elegans Hypothetical
protein C32D5.6 protein.
Length = 578
Score = 43.2 bits (97), Expect = 1e-04
Identities = 28/102 (27%), Positives = 51/102 (50%), Gaps = 2/102 (1%)
Frame = +1
Query: 190 EFQDATEYHPTYDMDLHI--SFEDCEVAIHKFFNNDLVGAMNIMRPWARTSLYHSLGASI 363
E+ DA + H TY L + + + ++ ++ F NN A M S+YHS+G +
Sbjct: 20 EYLDAYD-HVTYSNSLELLDTIAETQITLNLFMNNKFELAEERMAELYDKSMYHSMGYTC 78
Query: 364 FEFIPAMLTFDHEQIGRSIVALKQCITICNKNRKSFSLVESL 489
FI A++T + + + ++ A K I K R+ S+ E++
Sbjct: 79 ILFIKAVMTVNKQDMEKAAEASKLSCEIIEKFRERRSIKETI 120
>Z82058-2|CAB04863.1| 224|Caenorhabditis elegans Hypothetical
protein T27C5.2 protein.
Length = 224
Score = 29.1 bits (62), Expect = 2.0
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -1
Query: 506 FFIMVPRLSTKEKLLRFLLQIVMHCFSATID 414
+F++ PR+ EK +RF+L V TID
Sbjct: 146 YFLITPRIDPTEKWIRFILSTVAWALVHTID 176
>AF040659-3|AAK39392.1| 919|Caenorhabditis elegans Hypothetical
protein ZK484.4a protein.
Length = 919
Score = 27.9 bits (59), Expect = 4.7
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = -3
Query: 177 RRITRTPAITASGARTARTGRSQYWHRFLSQS 82
R I P S ART RT RS Y H F+ +
Sbjct: 407 RNIEDVPKELLSPARTTRTSRSDYKHFFVEDT 438
>AF040659-2|AAK39393.1| 873|Caenorhabditis elegans Hypothetical
protein ZK484.4b protein.
Length = 873
Score = 27.9 bits (59), Expect = 4.7
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = -3
Query: 177 RRITRTPAITASGARTARTGRSQYWHRFLSQS 82
R I P S ART RT RS Y H F+ +
Sbjct: 407 RNIEDVPKELLSPARTTRTSRSDYKHFFVEDT 438
>Z82260-5|CAB05133.1| 194|Caenorhabditis elegans Hypothetical
protein C32H11.6 protein.
Length = 194
Score = 27.1 bits (57), Expect = 8.1
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +1
Query: 343 HSLGASIFEFIPAMLTFDHEQIGRSIVALKQCITICNKNRKSFSLVESLG 492
H G ++F+ + FD+ QIG Q +TI +++KS E G
Sbjct: 28 HEAGGAVFQNLTEKALFDYFQIG-----FDQTLTIAERDQKSAEWAEKHG 72
>U61955-4|AAC24407.1| 772|Caenorhabditis elegans Zygotic epidermal
enclosure defectiveprotein 4, isoform b protein.
Length = 772
Score = 27.1 bits (57), Expect = 8.1
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +1
Query: 406 IGRSIVALKQCITICNKNRKSFS 474
I +S++ L+QCI + +N+KS S
Sbjct: 348 INQSLMTLRQCIEVLRRNQKSSS 370
>U61955-3|AAC24406.1| 775|Caenorhabditis elegans Zygotic epidermal
enclosure defectiveprotein 4, isoform a protein.
Length = 775
Score = 27.1 bits (57), Expect = 8.1
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +1
Query: 406 IGRSIVALKQCITICNKNRKSFS 474
I +S++ L+QCI + +N+KS S
Sbjct: 348 INQSLMTLRQCIEVLRRNQKSSS 370
>U61955-2|AAM97993.1| 777|Caenorhabditis elegans Zygotic epidermal
enclosure defectiveprotein 4, isoform c protein.
Length = 777
Score = 27.1 bits (57), Expect = 8.1
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +1
Query: 406 IGRSIVALKQCITICNKNRKSFS 474
I +S++ L+QCI + +N+KS S
Sbjct: 350 INQSLMTLRQCIEVLRRNQKSSS 372
>AF057568-1|AAC33438.1| 772|Caenorhabditis elegans kinesin-like
protein ZEN-4b protein.
Length = 772
Score = 27.1 bits (57), Expect = 8.1
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +1
Query: 406 IGRSIVALKQCITICNKNRKSFS 474
I +S++ L+QCI + +N+KS S
Sbjct: 348 INQSLMTLRQCIEVLRRNQKSSS 370
>AF057567-1|AAC33437.1| 775|Caenorhabditis elegans kinesin-like
protein ZEN-4a protein.
Length = 775
Score = 27.1 bits (57), Expect = 8.1
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +1
Query: 406 IGRSIVALKQCITICNKNRKSFS 474
I +S++ L+QCI + +N+KS S
Sbjct: 348 INQSLMTLRQCIEVLRRNQKSSS 370
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,621,208
Number of Sequences: 27780
Number of extensions: 264053
Number of successful extensions: 746
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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