Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS315C11f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    25   0.47 
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    23   1.4  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   3.3  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   3.3  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    22   4.4  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    21   7.7  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   7.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   7.7  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   7.7  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   7.7  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 25.0 bits (52), Expect = 0.47
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -3

Query: 240 SAAVPSICHILCFLRLH 190
           +A+V  ICHILC   LH
Sbjct: 286 AASVNLICHILCMSDLH 302


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 13/97 (13%), Positives = 36/97 (37%)
 Frame = +3

Query: 27  NESSKHDAPSGSSHSESERVTPSAGYSKDKDKGDAESLSIKKESMSTSSNDEREDEDGEN 206
           N+++ +      + +       +A       + D      K+     + N +  +   +N
Sbjct: 429 NQNADNQNADNQNANNQNADNQNANKQNGNRQNDNRQNDNKQNGNRQNDNKQNGNRQNDN 488

Query: 207 KECGRLTARRRSSSNPVNLSLARNSVNTGSEHDDSQD 317
           K+ G      + + N  N +   ++   G+  +D+Q+
Sbjct: 489 KQNGNRQNGNKQNDNKQNGNRQNDNKRNGNRQNDNQN 525


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = +3

Query: 222 LTARRRSSSNPVNLSLARNSVNTGSEHDDSQDVD 323
           L+  RR+     +LSLA N+    + H++   ++
Sbjct: 18  LSLDRRARRGAADLSLAGNATKVNTVHEEESSLN 51


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 384  DQPQETVYRRQLLNDRIGRGIERAK 458
            D+   +  RRQ +    GRGIE AK
Sbjct: 1165 DKQANSKTRRQEMMREAGRGIESAK 1189


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 329 FYIYVL*VVMFTACVY*ISCER*IDRIRGTPPPCR 225
           F+  VL  ++  + +Y   C R  + I+G PPP R
Sbjct: 461 FHSIVLGSLLNPSHMYRAVCGRIENTIQGLPPPYR 495


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 14/53 (26%), Positives = 22/53 (41%)
 Frame = +3

Query: 12  TDINSNESSKHDAPSGSSHSESERVTPSAGYSKDKDKGDAESLSIKKESMSTS 170
           T  + N      +PS S   E + +  ++  S   D    +S S    +MSTS
Sbjct: 187 TASSRNSDRSAGSPSVSESDEVDVIGYTSNQSDTDDHSSVQSSSDSGVTMSTS 239


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +3

Query: 237 RSSSNPVNLSLARNSVNTGSEHDD 308
           R S     + +++NSV+TGS+ ++
Sbjct: 292 RDSPIEPEIEISQNSVSTGSDKEN 315


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 21  NSNESSKHDAPSGSSHSESERVTPSAGY 104
           N+  +S+    SGSS S +   + S+GY
Sbjct: 19  NTCSNSQSQRSSGSSISRNSNRSESSGY 46


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 33  SSKHDAPSGSSHSESERVTPSAGYSKDKDKGD 128
           + K D P+ SS S +     S+  S+DK+  D
Sbjct: 586 TEKPDKPASSSASSAPTSVCSSPRSEDKEVED 617


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 21  NSNESSKHDAPSGSSHSESERVTPSAGY 104
           N+  +S+    SGSS S +   + S+GY
Sbjct: 19  NTCSNSQSQRSSGSSISRNSNRSESSGY 46


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,047
Number of Sequences: 438
Number of extensions: 2053
Number of successful extensions: 13
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)