Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS315C09f
(360 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0421 + 21990034-21990392,21991691-21992681 31 0.21
12_01_0347 + 2658545-2659309 29 1.1
07_03_0203 + 15138864-15140452,15140629-15140726,15141924-151422... 29 1.1
05_07_0146 + 28018236-28018580,28018670-28018777,28018984-280191... 28 2.5
06_01_1193 + 10264360-10264504,10264763-10264910,10268350-102687... 27 3.4
06_01_0318 - 2284481-2284594,2285340-2286044,2286589-2286609,228... 27 3.4
12_02_0122 + 13923510-13925081 27 5.9
10_08_0106 + 14842748-14843085,14843122-14843250,14844145-148442... 26 7.7
07_01_0294 + 2130956-2131087,2131495-2131950 26 7.7
05_04_0373 + 20732358-20732675,20733555-20734440,20734523-20735625 26 7.7
04_04_1098 + 30876785-30876835,30876846-30877171,30877396-308774... 26 7.7
02_03_0315 - 17610605-17610855,17611304-17611370,17612876-176129... 26 7.7
>01_05_0421 + 21990034-21990392,21991691-21992681
Length = 449
Score = 31.5 bits (68), Expect = 0.21
Identities = 11/37 (29%), Positives = 25/37 (67%)
Frame = -3
Query: 226 ERQMERHRQLKRPPVRHKRQGQQRMQLIRC*CDGSIE 116
++Q + H+ + + P +H++Q QQR QL++ C +++
Sbjct: 185 QQQQQHHQDVMQSPHQHQQQQQQRQQLVQQNCGYAVK 221
>12_01_0347 + 2658545-2659309
Length = 254
Score = 29.1 bits (62), Expect = 1.1
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +3
Query: 33 AGRHRRGQADTIERTIGGGTCSG 101
A RHRR +T R +GGG C G
Sbjct: 142 ARRHRRWSLETRPRGVGGGCCPG 164
>07_03_0203 +
15138864-15140452,15140629-15140726,15141924-15142235,
15142437-15142749,15144025-15146023,15147033-15147068
Length = 1448
Score = 29.1 bits (62), Expect = 1.1
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +3
Query: 99 GNRNQLSILPSHQQRISCIRCCPCRLCRTGGR 194
GN LS++PSH CI C R+ T R
Sbjct: 275 GNLKSLSLVPSHSASSKCISCDGLRIVSTPPR 306
>05_07_0146 +
28018236-28018580,28018670-28018777,28018984-28019148,
28019269-28019736,28019823-28019936,28020038-28020715
Length = 625
Score = 27.9 bits (59), Expect = 2.5
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -3
Query: 268 HSRQGQRDRGPKLPERQMERHRQLKRPPVRHKRQGQ 161
H G R+RG E RH Q ++PP ++Q Q
Sbjct: 283 HPIHGGRERGSSPAEADHHRHHQQEQPPPPPQQQQQ 318
>06_01_1193 +
10264360-10264504,10264763-10264910,10268350-10268748,
10268925-10271214
Length = 993
Score = 27.5 bits (58), Expect = 3.4
Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 10/84 (11%)
Frame = +3
Query: 15 YLSHLCAGRHRRGQADTIERTIGG----GTCSGNRNQLSILPSHQQRISCIRCCPCRLCR 182
+L +L GR T+ R+IG T + + ++ LP+ ++ C+R C
Sbjct: 604 HLKYLSFGRIFSSCIYTLPRSIGKLHGLQTLNMSSTYIATLPTEISKLQCLRTLRCTRVS 663
Query: 183 TGGRFS------CLCRSICLSGSF 236
FS CL ++CL F
Sbjct: 664 NNNNFSINHPVKCLTNTMCLPNIF 687
>06_01_0318 -
2284481-2284594,2285340-2286044,2286589-2286609,
2287186-2287257,2287762-2287842,2288059-2288133,
2288197-2288484
Length = 451
Score = 27.5 bits (58), Expect = 3.4
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = -3
Query: 289 RSGIKRQHSRQGQRDRGPKLPERQMERHRQLKRPPVRHKRQGQQR 155
RS +R+ SR +RD + +R R R RH R+ + R
Sbjct: 276 RSSPRRRRSRSHERDHDSERDRSDRDRGRHKDREHDRHAREDRDR 320
>12_02_0122 + 13923510-13925081
Length = 523
Score = 26.6 bits (56), Expect = 5.9
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = +3
Query: 9 ENYLSHLCAGRHRRGQAD 62
E YLSH CA R RR +AD
Sbjct: 74 EAYLSHACARRARRLKAD 91
>10_08_0106 +
14842748-14843085,14843122-14843250,14844145-14844211,
14847177-14847324,14847998-14848097,14848306-14848384,
14848527-14848687,14848829-14848908,14849319-14849475,
14849575-14849723,14849909-14850076,14850426-14850719,
14851002-14851046,14851213-14851462,14851707-14851835,
14852799-14853039,14853977-14854642
Length = 1066
Score = 26.2 bits (55), Expect = 7.7
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Frame = -3
Query: 277 KRQHSRQGQRDRGPKLP---ERQMERHRQLKRPPVRHKRQGQQR 155
+R HSR+ +R+R + ER+ ER R+ R R + + Q+R
Sbjct: 768 ERGHSRERERERERERERERERERERERERDRDQNRDRDRDQER 811
>07_01_0294 + 2130956-2131087,2131495-2131950
Length = 195
Score = 26.2 bits (55), Expect = 7.7
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -1
Query: 273 GNIAGRGSEIGGRSYQRGR 217
GN+A GSE+GG + GR
Sbjct: 130 GNVAAAGSEVGGGGRRSGR 148
>05_04_0373 + 20732358-20732675,20733555-20734440,20734523-20735625
Length = 768
Score = 26.2 bits (55), Expect = 7.7
Identities = 10/24 (41%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Frame = -3
Query: 208 HRQLKRPPVR--HKRQGQQRMQLI 143
HR+L PP+R H+R G+Q ++
Sbjct: 141 HRRLHHPPIRLKHRRDGEQPANVV 164
>04_04_1098 +
30876785-30876835,30876846-30877171,30877396-30877418,
30877687-30879392
Length = 701
Score = 26.2 bits (55), Expect = 7.7
Identities = 10/40 (25%), Positives = 24/40 (60%)
Frame = -3
Query: 277 KRQHSRQGQRDRGPKLPERQMERHRQLKRPPVRHKRQGQQ 158
+++ RQ QR+ K E + ++ R+ +R + ++QG++
Sbjct: 655 RKELDRQKQREEERKAKELEKQKQREEERKALEKQKQGER 694
>02_03_0315 -
17610605-17610855,17611304-17611370,17612876-17612941,
17613037-17613158,17613245-17613428,17614262-17614494,
17614580-17614913,17615043-17615186,17615303-17615344
Length = 480
Score = 26.2 bits (55), Expect = 7.7
Identities = 16/33 (48%), Positives = 18/33 (54%)
Frame = -1
Query: 261 GRGSEIGGRSYQRGRWSDIGS*SDRRCDISGRG 163
GRG+ GGRSY RG +S R D GRG
Sbjct: 421 GRGNYSGGRSYGRGDFS-------YRSDYGGRG 446
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,162,448
Number of Sequences: 37544
Number of extensions: 168432
Number of successful extensions: 650
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 554421256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -