Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS315C09f
(360 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80840-11|AAB37935.3| 392|Caenorhabditis elegans Hypothetical p... 29 1.3
AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical... 28 1.7
AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein p... 28 1.7
AF106579-3|ABS19464.1| 4488|Caenorhabditis elegans Kettin (droso... 28 2.3
AF106579-2|AAM45364.1| 4369|Caenorhabditis elegans Kettin (droso... 28 2.3
AF106579-1|AAM45363.1| 4447|Caenorhabditis elegans Kettin (droso... 28 2.3
AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical ... 27 3.0
AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical ... 27 3.0
AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical ... 27 3.0
AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein. 27 3.0
U97194-8|AAB52447.3| 1254|Caenorhabditis elegans Prion-like-(q/n... 27 3.9
Z70265-2|CAA94200.1| 388|Caenorhabditis elegans Hypothetical pr... 27 5.2
U41110-4|AAA82419.1| 575|Caenorhabditis elegans Hypothetical pr... 27 5.2
AL132864-5|CAH60767.2| 281|Caenorhabditis elegans Hypothetical ... 27 5.2
Z77659-7|CAB01166.2| 137|Caenorhabditis elegans Hypothetical pr... 26 6.9
U55376-4|AAA98006.1| 57|Caenorhabditis elegans Hypothetical pr... 26 6.9
AF099002-3|AAO91691.1| 570|Caenorhabditis elegans Hypothetical ... 26 6.9
AF099002-2|AAC68740.2| 556|Caenorhabditis elegans Hypothetical ... 26 6.9
AF099002-1|AAK68587.1| 559|Caenorhabditis elegans Hypothetical ... 26 6.9
Z82093-6|CAB05014.1| 256|Caenorhabditis elegans Hypothetical pr... 26 9.1
Z71263-5|CAA95824.1| 356|Caenorhabditis elegans Hypothetical pr... 26 9.1
U00066-9|AAA50743.3| 780|Caenorhabditis elegans Mediator protei... 26 9.1
U00066-8|AAM54164.1| 777|Caenorhabditis elegans Mediator protei... 26 9.1
AF291847-1|AAK55964.1| 356|Caenorhabditis elegans heterotrimeri... 26 9.1
>U80840-11|AAB37935.3| 392|Caenorhabditis elegans Hypothetical
protein F08D12.12 protein.
Length = 392
Score = 28.7 bits (61), Expect = 1.3
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -3
Query: 298 RILRSGIKRQHSRQGQRDRGPKLPERQMERHRQLKRPP 185
R L+ G+K Q S ++ K P+ M+ R+L +PP
Sbjct: 98 RFLKRGVKSQLSNSSSAEQCGKPPDPTMKNIRELLQPP 135
>AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical
protein Y116A8C.32 protein.
Length = 699
Score = 28.3 bits (60), Expect = 1.7
Identities = 13/40 (32%), Positives = 17/40 (42%)
Frame = -3
Query: 274 RQHSRQGQRDRGPKLPERQMERHRQLKRPPVRHKRQGQQR 155
R+ R R P+ +R+ R R PP R R G R
Sbjct: 91 RERRSSRSRSRSPRDRDRERRRRRSRSPPPRRRSRSGGDR 130
>AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein
protein.
Length = 699
Score = 28.3 bits (60), Expect = 1.7
Identities = 13/40 (32%), Positives = 17/40 (42%)
Frame = -3
Query: 274 RQHSRQGQRDRGPKLPERQMERHRQLKRPPVRHKRQGQQR 155
R+ R R P+ +R+ R R PP R R G R
Sbjct: 91 RERRSSRSRSRSPRDRDRERRRRRSRSPPPRRRSRSGGDR 130
>AF106579-3|ABS19464.1| 4488|Caenorhabditis elegans Kettin
(drosophila actin-binding)homolog protein 1, isoform a
protein.
Length = 4488
Score = 27.9 bits (59), Expect = 2.3
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = -3
Query: 295 ILRSGIKRQHSRQGQRDRGPKLPERQMERHRQLKRPPVRHKRQ 167
+ + QH RQ Q R +L + Q ++H+Q ++ P ++Q
Sbjct: 177 VTHQNLYEQHRRQQQLIREQQLYQHQHQQHQQQQQQPQEQQQQ 219
>AF106579-2|AAM45364.1| 4369|Caenorhabditis elegans Kettin
(drosophila actin-binding)homolog protein 1, isoform d
protein.
Length = 4369
Score = 27.9 bits (59), Expect = 2.3
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = -3
Query: 295 ILRSGIKRQHSRQGQRDRGPKLPERQMERHRQLKRPPVRHKRQ 167
+ + QH RQ Q R +L + Q ++H+Q ++ P ++Q
Sbjct: 177 VTHQNLYEQHRRQQQLIREQQLYQHQHQQHQQQQQQPQEQQQQ 219
>AF106579-1|AAM45363.1| 4447|Caenorhabditis elegans Kettin
(drosophila actin-binding)homolog protein 1, isoform c
protein.
Length = 4447
Score = 27.9 bits (59), Expect = 2.3
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = -3
Query: 295 ILRSGIKRQHSRQGQRDRGPKLPERQMERHRQLKRPPVRHKRQ 167
+ + QH RQ Q R +L + Q ++H+Q ++ P ++Q
Sbjct: 177 VTHQNLYEQHRRQQQLIREQQLYQHQHQQHQQQQQQPQEQQQQ 219
>AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical
protein Y47H9C.4c protein.
Length = 1045
Score = 27.5 bits (58), Expect = 3.0
Identities = 18/60 (30%), Positives = 24/60 (40%)
Frame = +3
Query: 36 GRHRRGQADTIERTIGGGTCSGNRNQLSILPSHQQRISCIRCCPCRLCRTGGRFSCLCRS 215
G++ G A + G TC + N L I P+ + C R C G R C C S
Sbjct: 722 GKYGYGCALDCPKCASGSTCD-HINGLCICPAGLEGALCTRPCSAGFWGNGCRQVCRCTS 780
>AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical
protein Y47H9C.4b protein.
Length = 1070
Score = 27.5 bits (58), Expect = 3.0
Identities = 18/60 (30%), Positives = 24/60 (40%)
Frame = +3
Query: 36 GRHRRGQADTIERTIGGGTCSGNRNQLSILPSHQQRISCIRCCPCRLCRTGGRFSCLCRS 215
G++ G A + G TC + N L I P+ + C R C G R C C S
Sbjct: 722 GKYGYGCALDCPKCASGSTCD-HINGLCICPAGLEGALCTRPCSAGFWGNGCRQVCRCTS 780
>AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical
protein Y47H9C.4a protein.
Length = 1111
Score = 27.5 bits (58), Expect = 3.0
Identities = 18/60 (30%), Positives = 24/60 (40%)
Frame = +3
Query: 36 GRHRRGQADTIERTIGGGTCSGNRNQLSILPSHQQRISCIRCCPCRLCRTGGRFSCLCRS 215
G++ G A + G TC + N L I P+ + C R C G R C C S
Sbjct: 722 GKYGYGCALDCPKCASGSTCD-HINGLCICPAGLEGALCTRPCSAGFWGNGCRQVCRCTS 780
>AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein.
Length = 1111
Score = 27.5 bits (58), Expect = 3.0
Identities = 18/60 (30%), Positives = 24/60 (40%)
Frame = +3
Query: 36 GRHRRGQADTIERTIGGGTCSGNRNQLSILPSHQQRISCIRCCPCRLCRTGGRFSCLCRS 215
G++ G A + G TC + N L I P+ + C R C G R C C S
Sbjct: 722 GKYGYGCALDCPKCASGSTCD-HINGLCICPAGLEGALCTRPCSAGFWGNGCRQVCRCTS 780
>U97194-8|AAB52447.3| 1254|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 20
protein.
Length = 1254
Score = 27.1 bits (57), Expect = 3.9
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -3
Query: 289 RSGIKRQHSRQGQRDRGPKLPERQMERHRQLKRP 188
R + +Q QGQ+ GP+ P Q + RQL P
Sbjct: 760 RMAMFQQQQAQGQQPGGPQQPMGQWPQQRQLPVP 793
>Z70265-2|CAA94200.1| 388|Caenorhabditis elegans Hypothetical
protein C05A9.3 protein.
Length = 388
Score = 26.6 bits (56), Expect = 5.2
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +3
Query: 33 AGRHRRGQADTIERTIGGG--TCSGNRNQLSILPSHQQR 143
AG HRR A + T GG TC+ N L + +H+QR
Sbjct: 153 AGAHRRSNASSTVSTHSGGRSTCA-MMNTLHMAVAHKQR 190
>U41110-4|AAA82419.1| 575|Caenorhabditis elegans Hypothetical
protein ZK682.5 protein.
Length = 575
Score = 26.6 bits (56), Expect = 5.2
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 239 PPISLPLPAMLPFNTRPQNPVY 304
PP++L LPA + RP N +Y
Sbjct: 554 PPVNLDLPAAYTLDDRPNNYLY 575
>AL132864-5|CAH60767.2| 281|Caenorhabditis elegans Hypothetical
protein Y53H1A.5 protein.
Length = 281
Score = 26.6 bits (56), Expect = 5.2
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -3
Query: 280 IKRQHSRQGQRDRGPKLP-ERQMERHRQLKRPPVRHKRQG 164
IKR+ RQ D G +LP ERQ H ++ ++ +R G
Sbjct: 160 IKRREMRQKMEDSG-RLPLERQKYMHESRRQHALKRRRTG 198
>Z77659-7|CAB01166.2| 137|Caenorhabditis elegans Hypothetical
protein F23B12.4 protein.
Length = 137
Score = 26.2 bits (55), Expect = 6.9
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +3
Query: 87 GTCSGNRNQLSILPSHQQRISCIRCCPCRLCR 182
G CS R Q PSHQQ ++ C LCR
Sbjct: 105 GRCSQWR-QFCASPSHQQYLTAFCARTCGLCR 135
>U55376-4|AAA98006.1| 57|Caenorhabditis elegans Hypothetical
protein F16H11.2 protein.
Length = 57
Score = 26.2 bits (55), Expect = 6.9
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -3
Query: 253 QRDRGPKLPERQMERHRQLKRPPVRHKRQGQQR 155
QRDR + ER+ ER R+ +R R + + ++R
Sbjct: 3 QRDRETEERERERERERERERERERERERERER 35
>AF099002-3|AAO91691.1| 570|Caenorhabditis elegans Hypothetical
protein Y71H10B.1c protein.
Length = 570
Score = 26.2 bits (55), Expect = 6.9
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +3
Query: 51 GQADTIERTIGGGTCSGNRNQLSILPSHQQRIS 149
G+A ERT G S N +S P HQ ++
Sbjct: 528 GEATKRERTKSGSDASSNAGDISTEPPHQDVVT 560
>AF099002-2|AAC68740.2| 556|Caenorhabditis elegans Hypothetical
protein Y71H10B.1a protein.
Length = 556
Score = 26.2 bits (55), Expect = 6.9
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +3
Query: 51 GQADTIERTIGGGTCSGNRNQLSILPSHQQRIS 149
G+A ERT G S N +S P HQ ++
Sbjct: 514 GEATKRERTKSGSDASSNAGDISTEPPHQDVVT 546
>AF099002-1|AAK68587.1| 559|Caenorhabditis elegans Hypothetical
protein Y71H10B.1b protein.
Length = 559
Score = 26.2 bits (55), Expect = 6.9
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +3
Query: 51 GQADTIERTIGGGTCSGNRNQLSILPSHQQRIS 149
G+A ERT G S N +S P HQ ++
Sbjct: 517 GEATKRERTKSGSDASSNAGDISTEPPHQDVVT 549
>Z82093-6|CAB05014.1| 256|Caenorhabditis elegans Hypothetical
protein ZK39.7 protein.
Length = 256
Score = 25.8 bits (54), Expect = 9.1
Identities = 21/68 (30%), Positives = 30/68 (44%)
Frame = +3
Query: 36 GRHRRGQADTIERTIGGGTCSGNRNQLSILPSHQQRISCIRCCPCRLCRTGGRFSCLCRS 215
G H + A+ R G T SG +NQ+ I + + I + GGR + CR+
Sbjct: 75 GTHSQADAENRCRQNVGATLSGVQNQVEINFITKSALDLISEASGSIW-IGGRRTQACRN 133
Query: 216 ICLSGSFG 239
LS S G
Sbjct: 134 SALSTSCG 141
>Z71263-5|CAA95824.1| 356|Caenorhabditis elegans Hypothetical
protein F52A8.2 protein.
Length = 356
Score = 25.8 bits (54), Expect = 9.1
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = +3
Query: 117 SILPSHQQRISCIRCCPCRLCRTGGRFSCLCR 212
S+L H+ RISC+R P + C R
Sbjct: 322 SVLYGHENRISCLRTSPDGTAVCSASWDCTIR 353
>U00066-9|AAA50743.3| 780|Caenorhabditis elegans Mediator protein
15, isoform a protein.
Length = 780
Score = 25.8 bits (54), Expect = 9.1
Identities = 8/22 (36%), Positives = 17/22 (77%)
Frame = -3
Query: 208 HRQLKRPPVRHKRQGQQRMQLI 143
H Q+ +PP+ H++Q QQ+ +++
Sbjct: 489 HMQMHQPPMWHQQQHQQQQRMM 510
>U00066-8|AAM54164.1| 777|Caenorhabditis elegans Mediator protein
15, isoform b protein.
Length = 777
Score = 25.8 bits (54), Expect = 9.1
Identities = 8/22 (36%), Positives = 17/22 (77%)
Frame = -3
Query: 208 HRQLKRPPVRHKRQGQQRMQLI 143
H Q+ +PP+ H++Q QQ+ +++
Sbjct: 486 HMQMHQPPMWHQQQHQQQQRMM 507
>AF291847-1|AAK55964.1| 356|Caenorhabditis elegans heterotrimeric G
protein beta subunit2 protein.
Length = 356
Score = 25.8 bits (54), Expect = 9.1
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = +3
Query: 117 SILPSHQQRISCIRCCPCRLCRTGGRFSCLCR 212
S+L H+ RISC+R P + C R
Sbjct: 322 SVLYGHENRISCLRTSPDGTAVCSASWDCTIR 353
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,617,332
Number of Sequences: 27780
Number of extensions: 128315
Number of successful extensions: 544
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 492763868
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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