Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS315C08f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0319 + 22330477-22330504,22331817-22332198,22333015-22333192 37 0.009
11_06_0317 + 22326599-22326695,22327058-22327439,22328334-22328511 37 0.009
03_01_0382 + 2961665-2961672,2962504-2962557,2962935-2963004,296... 37 0.009
07_03_0203 + 15138864-15140452,15140629-15140726,15141924-151422... 32 0.32
05_04_0373 + 20732358-20732675,20733555-20734440,20734523-20735625 30 1.3
01_05_0421 + 21990034-21990392,21991691-21992681 30 1.3
12_01_0347 + 2658545-2659309 29 2.3
07_03_1185 + 24645963-24646316,24647990-24648226,24649027-246491... 29 3.0
06_01_0318 - 2284481-2284594,2285340-2286044,2286589-2286609,228... 29 3.0
04_03_1028 - 21827961-21827972,21828018-21828112,21828286-218283... 28 5.2
>11_06_0319 + 22330477-22330504,22331817-22332198,22333015-22333192
Length = 195
Score = 37.1 bits (82), Expect = 0.009
Identities = 16/28 (57%), Positives = 22/28 (78%)
Frame = +3
Query: 336 IRHEGEVWRVKYTLARIRKAARELLTLE 419
+R + E+WRV+Y L+RIR AR LLTL+
Sbjct: 38 LRCKRELWRVQYALSRIRNNARHLLTLD 65
>11_06_0317 + 22326599-22326695,22327058-22327439,22328334-22328511
Length = 218
Score = 37.1 bits (82), Expect = 0.009
Identities = 16/28 (57%), Positives = 22/28 (78%)
Frame = +3
Query: 336 IRHEGEVWRVKYTLARIRKAARELLTLE 419
+R + E+WRV+Y L+RIR AR LLTL+
Sbjct: 61 LRCKRELWRVQYALSRIRNNARHLLTLD 88
>03_01_0382 +
2961665-2961672,2962504-2962557,2962935-2963004,
2963141-2963386,2967246-2967491,2968837-2968888,
2969270-2969651,2970527-2970681,2971389-2971713,
2975803-2975871,2976189-2976346,2976444-2976551,
2976659-2977131
Length = 781
Score = 37.1 bits (82), Expect = 0.009
Identities = 16/28 (57%), Positives = 22/28 (78%)
Frame = +3
Query: 336 IRHEGEVWRVKYTLARIRKAARELLTLE 419
+R + E+WRV+Y L+RIR AR LLTL+
Sbjct: 254 LRCKRELWRVQYALSRIRNNARHLLTLD 281
>07_03_0203 +
15138864-15140452,15140629-15140726,15141924-15142235,
15142437-15142749,15144025-15146023,15147033-15147068
Length = 1448
Score = 31.9 bits (69), Expect = 0.32
Identities = 16/46 (34%), Positives = 20/46 (43%)
Frame = +2
Query: 104 GNRNKLSVLPSHQQRISCIRCCPCRLCRTGGRFSCLCRSICPFGSF 241
GN LS++PSH CI C R+ T R + P G F
Sbjct: 275 GNLKSLSLVPSHSASSKCISCDGLRIVSTPPRLLQKLELLMPIGVF 320
>05_04_0373 + 20732358-20732675,20733555-20734440,20734523-20735625
Length = 768
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = -3
Query: 234 PKGQMERHRQLKRPPVR--HKRQGQQRMQLI 148
P+G HR+L PP+R H+R G+Q ++
Sbjct: 134 PRGAHFNHRRLHHPPIRLKHRRDGEQPANVV 164
>01_05_0421 + 21990034-21990392,21991691-21992681
Length = 449
Score = 29.9 bits (64), Expect = 1.3
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = -3
Query: 225 QMERHRQLKRPPVRHKRQGQQRMQLIRC*C 136
Q + H+ + + P +H++Q QQR QL++ C
Sbjct: 187 QQQHHQDVMQSPHQHQQQQQQRQQLVQQNC 216
>12_01_0347 + 2658545-2659309
Length = 254
Score = 29.1 bits (62), Expect = 2.3
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 38 AGRHRRGQADTFKRTIGGGTCSG 106
A RHRR +T R +GGG C G
Sbjct: 142 ARRHRRWSLETRPRGVGGGCCPG 164
>07_03_1185 +
24645963-24646316,24647990-24648226,24649027-24649170,
24649296-24649427,24649524-24649811
Length = 384
Score = 28.7 bits (61), Expect = 3.0
Identities = 20/62 (32%), Positives = 29/62 (46%)
Frame = -3
Query: 357 ILHPRAEFGTRYSGCHLNRILRSGIKRQHSRQGQRDRGPKLPKGQMERHRQLKRPPVRHK 178
+L R+ FG G RS R +R+ Q+ +GP LP+ R R L P + H
Sbjct: 55 VLGQRSSFGGGGGGGG-GAFERSASVRYAARRQQQQQGPPLPRSSSTRPRSLADPEL-HP 112
Query: 177 RQ 172
+Q
Sbjct: 113 QQ 114
>06_01_0318 -
2284481-2284594,2285340-2286044,2286589-2286609,
2287186-2287257,2287762-2287842,2288059-2288133,
2288197-2288484
Length = 451
Score = 28.7 bits (61), Expect = 3.0
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = -3
Query: 294 RSGIKRQHSRQGQRDRGPKLPKGQMERHRQLKRPPVRHKRQGQQR 160
RS +R+ SR +RD + + +R R R RH R+ + R
Sbjct: 276 RSSPRRRRSRSHERDHDSERDRSDRDRGRHKDREHDRHAREDRDR 320
>04_03_1028 -
21827961-21827972,21828018-21828112,21828286-21828361,
21828921-21829037,21829532-21829621,21830011-21830056,
21831407-21831502,21831599-21832008
Length = 313
Score = 27.9 bits (59), Expect = 5.2
Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Frame = -3
Query: 330 TRYSGCHLNRILRSGIKRQHSRQGQRDRG--PKLPKGQMERHRQL 202
TR S +R R G R SR R R P+ P G+ RH L
Sbjct: 60 TRRSSRSRSRSPRRGRSRSRSRSRSRGRSASPRYPDGKRRRHNDL 104
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,055,283
Number of Sequences: 37544
Number of extensions: 243815
Number of successful extensions: 792
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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