Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS315C05f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   3.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   4.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   4.4  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   5.8  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   5.8  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   5.8  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   5.8  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 108 QVPPVGAPRQERHAVSV 58
           Q+PP   PR ER A +V
Sbjct: 736 QMPPTAQPRMERLAEAV 752


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 11/29 (37%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
 Frame = +1

Query: 37  FRKSLEGHTY-GVSFLAWSPDGRYLIAAG 120
           FR  +  H   G  F+ W  DGR L   G
Sbjct: 350 FRCEVSTHPQAGPHFITWYKDGRQLPGTG 378


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 11/29 (37%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
 Frame = +1

Query: 37  FRKSLEGHTY-GVSFLAWSPDGRYLIAAG 120
           FR  +  H   G  F+ W  DGR L   G
Sbjct: 350 FRCEVSTHPQAGPHFITWYKDGRQLPGTG 378


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/20 (45%), Positives = 9/20 (45%)
 Frame = +2

Query: 86  GAPTGGT*SPRAPRTAPTCG 145
           G PTG T  P    T   CG
Sbjct: 412 GPPTGATTGPNEIVTCTNCG 431


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/20 (45%), Positives = 9/20 (45%)
 Frame = +2

Query: 86  GAPTGGT*SPRAPRTAPTCG 145
           G PTG T  P    T   CG
Sbjct: 398 GPPTGATTGPNEIVTCTNCG 417


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/20 (45%), Positives = 9/20 (45%)
 Frame = +2

Query: 86  GAPTGGT*SPRAPRTAPTCG 145
           G PTG T  P    T   CG
Sbjct: 432 GPPTGATTGPNEIVTCTNCG 451


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/20 (45%), Positives = 9/20 (45%)
 Frame = +2

Query: 86  GAPTGGT*SPRAPRTAPTCG 145
           G PTG T  P    T   CG
Sbjct: 381 GPPTGATTGPNEIVTCTNCG 400


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,999
Number of Sequences: 438
Number of extensions: 1751
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)