Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS315C03f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0199 - 23165776-23166259,23166356-23167128,23167633-231678... 29 2.3
04_04_1547 - 34306836-34308713,34308938-34309048,34310056-34310202 29 2.3
12_02_0592 + 20868884-20868954,20869091-20869216,20869554-208698... 28 4.0
10_08_0914 + 21535519-21535797,21535961-21536339,21536425-215365... 28 4.0
11_04_0289 - 15804766-15804977,15805742-15805862,15806541-158067... 27 6.9
11_01_0711 - 5839385-5840311,5840815-5841111 27 6.9
06_02_0038 + 10865068-10865150,10865249-10865335,10865835-108659... 27 6.9
06_01_0655 + 4742267-4742531,4743313-4744136 27 6.9
05_01_0415 - 3275236-3276244,3276342-3276428,3276829-3277208,327... 27 6.9
09_04_0076 + 14350020-14350164,14351020-14351129,14351436-143516... 27 9.1
04_04_1636 + 34951841-34954322,34954440-34954627,34955737-349558... 27 9.1
>05_05_0199 -
23165776-23166259,23166356-23167128,23167633-23167869,
23167973-23168197
Length = 572
Score = 29.1 bits (62), Expect = 2.3
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = +2
Query: 32 ASGELSILHS-PESLSFSGSSKTFESLLKEIFSASLGLSVEENSEWNGLLITDPFNTPEA 208
A G L +++S P SLS + S +F SLL S G S+ L+T P + P +
Sbjct: 4 APGSLPLVNSRPVSLSLAASRSSFSSLL----SGGAGSSLN--------LMTPPSSLPPS 51
Query: 209 VVEVYISGISSLG 247
Y G+SS G
Sbjct: 52 SPSSYFGGVSSSG 64
>04_04_1547 - 34306836-34308713,34308938-34309048,34310056-34310202
Length = 711
Score = 29.1 bits (62), Expect = 2.3
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = +2
Query: 257 DFKSKKYPLVVDEYEPDTFDVLKHRINQRFTNG 355
DF YP+ EY P FDV H +RF NG
Sbjct: 311 DFGGDMYPVEDYEYAPADFDVRAHHERERF-NG 342
>12_02_0592 +
20868884-20868954,20869091-20869216,20869554-20869862,
20870017-20870300,20870410-20871305,20871586-20871642,
20872293-20872340,20873046-20873114
Length = 619
Score = 28.3 bits (60), Expect = 4.0
Identities = 22/88 (25%), Positives = 40/88 (45%)
Frame = +2
Query: 167 NGLLITDPFNTPEAVVEVYISGISSLGSSADFKSKKYPLVVDEYEPDTFDVLKHRINQRF 346
N +L PF TP+ + ++ + + G SAD PL D+ +P + ++ QR
Sbjct: 255 NFILGAMPFGTPQDLNYANVTSVRTTGFSAD------PLPTDQKQP-AWKPYLYKGRQRT 307
Query: 347 TNGGNKLVNINLSDSDQLLSYSNVLGDL 430
+ +N L D D + + +V G +
Sbjct: 308 LFSSLETLNAALYDRDDVQDFLSVSGQV 335
>10_08_0914 +
21535519-21535797,21535961-21536339,21536425-21536568,
21536681-21536730,21536820-21536877,21536979-21537208
Length = 379
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/54 (24%), Positives = 29/54 (53%)
Frame = +2
Query: 8 ISSIIGINASGELSILHSPESLSFSGSSKTFESLLKEIFSASLGLSVEENSEWN 169
I S +G+ +SG+L L + + + G++ + + +E+ S + L E+ W+
Sbjct: 198 IQSAVGVRSSGDLMTLTAAAATALRGAATMKQRVQREMRSNASVLPYEKGHSWS 251
>11_04_0289 -
15804766-15804977,15805742-15805862,15806541-15806776,
15807639-15807766,15807873-15807910,15808041-15808129,
15808669-15808774,15811395-15811580
Length = 371
Score = 27.5 bits (58), Expect = 6.9
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = -1
Query: 155 SLQRKGQEKQ--KIFLLKDSRKFYWNQRNLTTQDYGGCLVRQRH*YL 21
S++R EK + L +RK W+ R+L+T+ +QRH Y+
Sbjct: 128 SVRRNQAEKHCSRASSLVSNRKKIWDSRSLSTRGLAPVTAQQRHHYI 174
>11_01_0711 - 5839385-5840311,5840815-5841111
Length = 407
Score = 27.5 bits (58), Expect = 6.9
Identities = 18/63 (28%), Positives = 27/63 (42%)
Frame = +2
Query: 44 LSILHSPESLSFSGSSKTFESLLKEIFSASLGLSVEENSEWNGLLITDPFNTPEAVVEVY 223
L+I H ++ + KT LKEI + L E+S + +TD T V E
Sbjct: 108 LTIAHK---ITLANKMKTISDELKEITNQHLSFRFTEDSSYKEHRVTDKRETSSKVEEAL 164
Query: 224 ISG 232
+ G
Sbjct: 165 VVG 167
>06_02_0038 +
10865068-10865150,10865249-10865335,10865835-10865936,
10867000-10870078
Length = 1116
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/43 (30%), Positives = 18/43 (41%)
Frame = -3
Query: 438 GISKSPNTFEYDKS*SESLKLIFTSLLPPLVKR*LILCFNTSK 310
G+SK PN Y S S K + P + I C+N +
Sbjct: 93 GVSKDPNPCSYSSSSPSSCKPSVVKFISPSARLQAIQCYNLQR 135
>06_01_0655 + 4742267-4742531,4743313-4744136
Length = 362
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +2
Query: 422 GDLDIPKVKKQSLQHLKSSVERRLPI 499
GDL + K KKQ Q K+ RRLP+
Sbjct: 20 GDLWLEKTKKQQQQKKKNKGARRLPL 45
>05_01_0415 -
3275236-3276244,3276342-3276428,3276829-3277208,
3279236-3279325
Length = 521
Score = 27.5 bits (58), Expect = 6.9
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +2
Query: 218 VYISGISSLGSSADFKSKKYPLVV 289
++++ ISS G+ DF + YPL+V
Sbjct: 62 LFVASISSFGADHDFAAMMYPLLV 85
>09_04_0076 +
14350020-14350164,14351020-14351129,14351436-14351601,
14351740-14351840,14351960-14352032,14352111-14352252,
14353239-14353399,14354017-14354129,14354226-14354325,
14354580-14354676,14354798-14354849,14355074-14355175,
14355256-14355402,14355485-14355656,14355752-14355991,
14356565-14356621,14356853-14356942,14357089-14357284,
14358117-14358228,14358305-14358459,14359155-14360580,
14360663-14360857,14361214-14361684
Length = 1540
Score = 27.1 bits (57), Expect = 9.1
Identities = 21/51 (41%), Positives = 28/51 (54%)
Frame = +2
Query: 95 TFESLLKEIFSASLGLSVEENSEWNGLLITDPFNTPEAVVEVYISGISSLG 247
TFES + IFSA LG S+ NS+ + D PEA++ + IS LG
Sbjct: 627 TFESEVDRIFSAPLG-SLANNSKRSCCRNID---NPEALIFSSATAISMLG 673
>04_04_1636 +
34951841-34954322,34954440-34954627,34955737-34955838,
34956101-34956177,34956258-34956319,34956504-34956511
Length = 972
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Frame = +2
Query: 155 NSEWNGLL---ITDPFNTPEAVVEVYISGIS-SLGSSADFKSK 271
N WN ++DP N PE +E Y+ I+ S+ S F K
Sbjct: 48 NPVWNERFYFNVSDPSNLPELALEAYVYNINRSIDGSRSFLGK 90
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,955,075
Number of Sequences: 37544
Number of extensions: 221265
Number of successful extensions: 624
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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