Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS315C03f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   1.4  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   3.3  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   3.3  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   3.3  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   4.4  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    21   7.7  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    21   7.7  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   7.7  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 186 IRSTLLKQLSKFTLVAYPVWGVPL 257
           +RS  + +LS   LV +PVW V L
Sbjct: 889 LRSLEILRLSGNRLVTFPVWQVTL 912


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 263 KSKKYPLVVDEYEPDTF 313
           ++K YPL VD++   TF
Sbjct: 66  RTKNYPLDVDQWHNKTF 82


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 116 LLKDSRKFYWNQRNLTTQD 60
           LLKD  K +W +R L   D
Sbjct: 179 LLKDPVKEFWERRTLQISD 197


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 116 LLKDSRKFYWNQRNLTTQD 60
           LLKD  K +W +R L   D
Sbjct: 232 LLKDPVKEFWERRTLQISD 250


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = +2

Query: 296 YEPDTFDVLKHRINQRFTNGGNKLVNINLSDSDQLLSYSNVL 421
           +E D+F V KH    R +  G    N+  + +   +  S V+
Sbjct: 707 WEGDSFKVSKHEEVSRTSTAGQFPTNVATTVTSMSIDQSTVI 748



 Score = 21.8 bits (44), Expect = 4.4
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 246 PRLDMPLM*TSTTASGVLNGSVINNP 169
           P + +P+   STT +GV+   VI  P
Sbjct: 827 PYMFLPVSYMSTTMAGVIYPPVIGTP 852


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 239 SLGSSADFKSKKYPLVVDEYEP 304
           S+ +    ++ KYP+VV  Y P
Sbjct: 5   SVEAVMSLRALKYPMVVHVYHP 26


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 239 SLGSSADFKSKKYPLVVDEYEP 304
           S+ +    ++ KYP+VV  Y P
Sbjct: 5   SVEAVMSLRALKYPMVVHVYHP 26


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +2

Query: 416 VLGDLDIPKVKKQSLQHLKSSVERRLPI 499
           V+G  +I K +  S  +     E+R+P+
Sbjct: 55  VIGGFEIEKSEDDSFNNQADKSEKRIPL 82


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,194
Number of Sequences: 438
Number of extensions: 2611
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)