Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS315C02f
         (425 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024856-1|ABB51172.1|  334|Caenorhabditis elegans Hypothetical ...    29   1.8  
Z48582-5|CAA88467.3|  377|Caenorhabditis elegans Hypothetical pr...    27   4.3  
AF016677-7|AAB66144.1|  292|Caenorhabditis elegans Hypothetical ...    27   7.4  

>AC024856-1|ABB51172.1|  334|Caenorhabditis elegans Hypothetical
           protein Y71G10AR.4 protein.
          Length = 334

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 122 TMKFPSSKIDADNYVHYYFNSNIFVPK 202
           T+KFP ++ + +N  HY  + N F P+
Sbjct: 56  TLKFPKNEFETENIEHYALSVNSFHPE 82


>Z48582-5|CAA88467.3|  377|Caenorhabditis elegans Hypothetical
           protein F27E5.5 protein.
          Length = 377

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 3/32 (9%)
 Frame = -3

Query: 135 GNFIV*I*VLYFCFLFYP-KIF--LTVKNSTS 49
           GNF++ I  L+FCF+ +P  IF  + + N+T+
Sbjct: 26  GNFVIYIVELFFCFIAFPLNIFFIIIIANTTT 57


>AF016677-7|AAB66144.1|  292|Caenorhabditis elegans Hypothetical
           protein ZK1240.8 protein.
          Length = 292

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +3

Query: 48  VKYYFSRLRKFSDRRESK 101
           +KY+FSR+R+  D RE +
Sbjct: 180 IKYHFSRIRQLVDEREKR 197


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,478,223
Number of Sequences: 27780
Number of extensions: 145372
Number of successful extensions: 295
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 295
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 703342068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)