Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS315B12f
(521 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X74331-1|CAA52378.1| 509|Homo sapiens DNA primase (p58 subunit)... 140 2e-33
BC064931-1|AAH64931.1| 509|Homo sapiens primase, DNA, polypepti... 140 2e-33
AL162579-2|CAI40673.1| 340|Homo sapiens primase, polypeptide 2A... 138 1e-32
AL121975-2|CAI42767.1| 340|Homo sapiens primase, polypeptide 2A... 138 1e-32
AL121958-1|CAC03545.2| 340|Homo sapiens primase, polypeptide 2A... 138 1e-32
BC017833-1|AAH17833.1| 158|Homo sapiens PRIM2A protein protein. 56 8e-08
AL162579-1|CAH73686.1| 158|Homo sapiens primase, polypeptide 2A... 56 8e-08
AL121975-1|CAI20534.1| 158|Homo sapiens primase, polypeptide 2A... 56 8e-08
BC150332-1|AAI50333.1| 1011|Homo sapiens CAP-GLY domain containi... 30 5.7
AF041059-1|AAB96784.1| 419|Homo sapiens similar to KIAA0291: DD... 30 5.7
AC005015-1|AAF03524.1| 1046|Homo sapiens KIAA0291; similar roden... 30 5.7
AB006629-1|BAA22960.2| 1024|Homo sapiens KIAA0291 protein. 30 5.7
>X74331-1|CAA52378.1| 509|Homo sapiens DNA primase (p58 subunit)
protein.
Length = 509
Score = 140 bits (340), Expect = 2e-33
Identities = 70/178 (39%), Positives = 111/178 (62%), Gaps = 5/178 (2%)
Frame = +3
Query: 3 LRLAYCRTEELRRWFIARELELFKMRFAVMRGEAVEVFFKLNNLCYTTISEDEKNEVIQN 182
LRLAYC++EELRRWFI +E++L + RF+++ + ++ F K + L + IS++EK Q
Sbjct: 106 LRLAYCQSEELRRWFIQQEMDLLRFRFSILPKDKIQDFLKDSQLQFEAISDEEKTLREQE 165
Query: 183 LIESTPYS---KIDNMKFYKVKFFEVLDLVKARKVFLNDGYAYIPHRDFISVLAAQYRTH 353
++ S+P K+ YK+ F + LDL + RKV+L DG+AY+P +D ++++ ++R
Sbjct: 166 IVASSPSLSGLKLGFESIYKIPFADALDLFRGRKVYLEDGFAYVPLKDIVAIILNEFRAK 225
Query: 354 LKQNLAKACHHLCEIEQDERLVCLLKGLHQSYSGNDYSETKAV--IPIESLDSISTKS 521
L + LA L ++ DERL LL L SY+G DYS V I ++ +D +STKS
Sbjct: 226 LSKALALTARSLPAVQSDERLQPLLNHLSHSYTGQDYSTQGNVGKISLDQIDLLSTKS 283
>BC064931-1|AAH64931.1| 509|Homo sapiens primase, DNA, polypeptide
2 (58kDa) protein.
Length = 509
Score = 140 bits (340), Expect = 2e-33
Identities = 70/178 (39%), Positives = 111/178 (62%), Gaps = 5/178 (2%)
Frame = +3
Query: 3 LRLAYCRTEELRRWFIARELELFKMRFAVMRGEAVEVFFKLNNLCYTTISEDEKNEVIQN 182
LRLAYC++EELRRWFI +E++L + RF+++ + ++ F K + L + IS++EK Q
Sbjct: 106 LRLAYCQSEELRRWFIQQEMDLLRFRFSILPKDKIQDFLKDSQLQFEAISDEEKTLREQE 165
Query: 183 LIESTPYS---KIDNMKFYKVKFFEVLDLVKARKVFLNDGYAYIPHRDFISVLAAQYRTH 353
++ S+P K+ YK+ F + LDL + RKV+L DG+AY+P +D ++++ ++R
Sbjct: 166 IVASSPSLSGLKLGFESIYKIPFADALDLFRGRKVYLEDGFAYVPLKDIVAIILNEFRAK 225
Query: 354 LKQNLAKACHHLCEIEQDERLVCLLKGLHQSYSGNDYSETKAV--IPIESLDSISTKS 521
L + LA L ++ DERL LL L SY+G DYS V I ++ +D +STKS
Sbjct: 226 LSKALALTARSLPAVQSDERLQPLLNHLSHSYTGQDYSTQGNVGKISLDQIDLLSTKS 283
>AL162579-2|CAI40673.1| 340|Homo sapiens primase, polypeptide 2A,
58kDa protein.
Length = 340
Score = 138 bits (334), Expect = 1e-32
Identities = 69/178 (38%), Positives = 110/178 (61%), Gaps = 5/178 (2%)
Frame = +3
Query: 3 LRLAYCRTEELRRWFIARELELFKMRFAVMRGEAVEVFFKLNNLCYTTISEDEKNEVIQN 182
LRLAYC++EELRRWFI +E++L + RF+++ + ++ F K + L + IS++EK Q
Sbjct: 106 LRLAYCQSEELRRWFIQQEMDLLRFRFSILPKDKIQDFLKDSQLQFEAISDEEKTLREQE 165
Query: 183 LIESTPYS---KIDNMKFYKVKFFEVLDLVKARKVFLNDGYAYIPHRDFISVLAAQYRTH 353
++ S+P K+ YK+ F + LDL + RKV+L DG+AY+P +D ++++ ++R
Sbjct: 166 IVASSPSLSGLKLGFESIYKIPFADALDLFRGRKVYLEDGFAYVPLKDIVAIILNEFRAK 225
Query: 354 LKQNLAKACHHLCEIEQDERLVCLLKGLHQSYSGNDYSETKAV--IPIESLDSISTKS 521
L + LA L ++ DERL LL L SY+ DYS V I ++ +D +STKS
Sbjct: 226 LSKALALTARSLPAVQSDERLQPLLNHLSHSYTSQDYSTQGNVGKISLDQIDLLSTKS 283
>AL121975-2|CAI42767.1| 340|Homo sapiens primase, polypeptide 2A,
58kDa protein.
Length = 340
Score = 138 bits (334), Expect = 1e-32
Identities = 69/178 (38%), Positives = 110/178 (61%), Gaps = 5/178 (2%)
Frame = +3
Query: 3 LRLAYCRTEELRRWFIARELELFKMRFAVMRGEAVEVFFKLNNLCYTTISEDEKNEVIQN 182
LRLAYC++EELRRWFI +E++L + RF+++ + ++ F K + L + IS++EK Q
Sbjct: 106 LRLAYCQSEELRRWFIQQEMDLLRFRFSILPKDKIQDFLKDSQLQFEAISDEEKTLREQE 165
Query: 183 LIESTPYS---KIDNMKFYKVKFFEVLDLVKARKVFLNDGYAYIPHRDFISVLAAQYRTH 353
++ S+P K+ YK+ F + LDL + RKV+L DG+AY+P +D ++++ ++R
Sbjct: 166 IVASSPSLSGLKLGFESIYKIPFADALDLFRGRKVYLEDGFAYVPLKDIVAIILNEFRAK 225
Query: 354 LKQNLAKACHHLCEIEQDERLVCLLKGLHQSYSGNDYSETKAV--IPIESLDSISTKS 521
L + LA L ++ DERL LL L SY+ DYS V I ++ +D +STKS
Sbjct: 226 LSKALALTARSLPAVQSDERLQPLLNHLSHSYTSQDYSTQGNVGKISLDQIDLLSTKS 283
>AL121958-1|CAC03545.2| 340|Homo sapiens primase, polypeptide 2A,
58kDa protein.
Length = 340
Score = 138 bits (334), Expect = 1e-32
Identities = 69/178 (38%), Positives = 110/178 (61%), Gaps = 5/178 (2%)
Frame = +3
Query: 3 LRLAYCRTEELRRWFIARELELFKMRFAVMRGEAVEVFFKLNNLCYTTISEDEKNEVIQN 182
LRLAYC++EELRRWFI +E++L + RF+++ + ++ F K + L + IS++EK Q
Sbjct: 106 LRLAYCQSEELRRWFIQQEMDLLRFRFSILPKDKIQDFLKDSQLQFEAISDEEKTLREQE 165
Query: 183 LIESTPYS---KIDNMKFYKVKFFEVLDLVKARKVFLNDGYAYIPHRDFISVLAAQYRTH 353
++ S+P K+ YK+ F + LDL + RKV+L DG+AY+P +D ++++ ++R
Sbjct: 166 IVASSPSLSGLKLGFESIYKIPFADALDLFRGRKVYLEDGFAYVPLKDIVAIILNEFRAK 225
Query: 354 LKQNLAKACHHLCEIEQDERLVCLLKGLHQSYSGNDYSETKAV--IPIESLDSISTKS 521
L + LA L ++ DERL LL L SY+ DYS V I ++ +D +STKS
Sbjct: 226 LSKALALTARSLPAVQSDERLQPLLNHLSHSYTSQDYSTQGNVGKISLDQIDLLSTKS 283
>BC017833-1|AAH17833.1| 158|Homo sapiens PRIM2A protein protein.
Length = 158
Score = 56.0 bits (129), Expect = 8e-08
Identities = 22/50 (44%), Positives = 37/50 (74%)
Frame = +3
Query: 3 LRLAYCRTEELRRWFIARELELFKMRFAVMRGEAVEVFFKLNNLCYTTIS 152
LRLAYC++EELRRWFI +E++L + RF+++ + ++ F K + L + +S
Sbjct: 106 LRLAYCQSEELRRWFIQQEMDLLRFRFSILPKDKIQDFLKDSQLQFEAVS 155
>AL162579-1|CAH73686.1| 158|Homo sapiens primase, polypeptide 2A,
58kDa protein.
Length = 158
Score = 56.0 bits (129), Expect = 8e-08
Identities = 22/50 (44%), Positives = 37/50 (74%)
Frame = +3
Query: 3 LRLAYCRTEELRRWFIARELELFKMRFAVMRGEAVEVFFKLNNLCYTTIS 152
LRLAYC++EELRRWFI +E++L + RF+++ + ++ F K + L + +S
Sbjct: 106 LRLAYCQSEELRRWFIQQEMDLLRFRFSILPKDKIQDFLKDSQLQFEAVS 155
>AL121975-1|CAI20534.1| 158|Homo sapiens primase, polypeptide 2A,
58kDa protein.
Length = 158
Score = 56.0 bits (129), Expect = 8e-08
Identities = 22/50 (44%), Positives = 37/50 (74%)
Frame = +3
Query: 3 LRLAYCRTEELRRWFIARELELFKMRFAVMRGEAVEVFFKLNNLCYTTIS 152
LRLAYC++EELRRWFI +E++L + RF+++ + ++ F K + L + +S
Sbjct: 106 LRLAYCQSEELRRWFIQQEMDLLRFRFSILPKDKIQDFLKDSQLQFEAVS 155
>BC150332-1|AAI50333.1| 1011|Homo sapiens CAP-GLY domain containing
linker protein 2 protein.
Length = 1011
Score = 29.9 bits (64), Expect = 5.7
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +3
Query: 357 KQNLAKACHHLCEIEQDERLVCLLKGLHQSY 449
+ +AKA H+CE+E++ + LLK H+ Y
Sbjct: 379 RAEVAKATSHICEVEKE---IALLKAQHEQY 406
>AF041059-1|AAB96784.1| 419|Homo sapiens similar to KIAA0291: DDBJ
Accession Number AB006629, restin and CLIP-170 protein.
Length = 419
Score = 29.9 bits (64), Expect = 5.7
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +3
Query: 357 KQNLAKACHHLCEIEQDERLVCLLKGLHQSY 449
+ +AKA H+CE+E++ + LLK H+ Y
Sbjct: 338 RAEVAKATSHICEVEKE---IALLKAQHEQY 365
>AC005015-1|AAF03524.1| 1046|Homo sapiens KIAA0291; similar rodent
cytoplasmic linker protein CLIP-115 and restin protein.
Length = 1046
Score = 29.9 bits (64), Expect = 5.7
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +3
Query: 357 KQNLAKACHHLCEIEQDERLVCLLKGLHQSY 449
+ +AKA H+CE+E++ + LLK H+ Y
Sbjct: 379 RAEVAKATSHICEVEKE---IALLKAQHEQY 406
>AB006629-1|BAA22960.2| 1024|Homo sapiens KIAA0291 protein.
Length = 1024
Score = 29.9 bits (64), Expect = 5.7
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +3
Query: 357 KQNLAKACHHLCEIEQDERLVCLLKGLHQSY 449
+ +AKA H+CE+E++ + LLK H+ Y
Sbjct: 392 RAEVAKATSHICEVEKE---IALLKAQHEQY 419
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,021,853
Number of Sequences: 237096
Number of extensions: 1098684
Number of successful extensions: 2046
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2010
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2041
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4990119376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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