Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS315B08f
(518 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|... 228 4e-61
SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein ... 228 4e-61
SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein L... 228 4e-61
SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit L2|Sc... 60 1e-10
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 30 0.18
SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces... 28 0.73
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 26 3.9
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe... 26 3.9
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe... 25 6.8
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c... 25 9.0
>SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|60S
ribosomal protein L8|Schizosaccharomyces pombe|chr
1|||Manual
Length = 253
Score = 228 bits (557), Expect = 4e-61
Identities = 99/136 (72%), Positives = 119/136 (87%)
Frame = -2
Query: 490 GAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRG 311
G MPEGTI+ N+EEK GDRG L R+SGN+ ++GH+ D +TRVKLPSGAKKV+PSS RG
Sbjct: 104 GEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSARG 163
Query: 310 MVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKAST 131
+VGIVAGGGRIDKP+LKAGRA+HKY+VKRNCWP RGVAMNPV+HPHGGGNHQH+G ++T
Sbjct: 164 VVGIVAGGGRIDKPLLKAGRAFHKYRVKRNCWPRTRGVAMNPVDHPHGGGNHQHVGHSTT 223
Query: 130 VKRGTSAGRKVGLIAA 83
V R ++ G+KVGLIAA
Sbjct: 224 VPRQSAPGQKVGLIAA 239
>SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 228 bits (557), Expect = 4e-61
Identities = 99/136 (72%), Positives = 119/136 (87%)
Frame = -2
Query: 490 GAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRG 311
G MPEGTI+ N+EEK GDRG L R+SGN+ ++GH+ D +TRVKLPSGAKKV+PSS RG
Sbjct: 104 GEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSARG 163
Query: 310 MVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKAST 131
+VGIVAGGGRIDKP+LKAGRA+HKY+VKRNCWP RGVAMNPV+HPHGGGNHQH+G ++T
Sbjct: 164 VVGIVAGGGRIDKPLLKAGRAFHKYRVKRNCWPRTRGVAMNPVDHPHGGGNHQHVGHSTT 223
Query: 130 VKRGTSAGRKVGLIAA 83
V R ++ G+KVGLIAA
Sbjct: 224 VPRQSAPGQKVGLIAA 239
>SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 228 bits (557), Expect = 4e-61
Identities = 99/136 (72%), Positives = 119/136 (87%)
Frame = -2
Query: 490 GAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRG 311
G MPEGTI+ N+EEK GDRG L R+SGN+ ++GH+ D +TRVKLPSGAKKV+PSS RG
Sbjct: 104 GEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSARG 163
Query: 310 MVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKAST 131
+VGIVAGGGRIDKP+LKAGRA+HKY+VKRNCWP RGVAMNPV+HPHGGGNHQH+G ++T
Sbjct: 164 VVGIVAGGGRIDKPLLKAGRAFHKYRVKRNCWPRTRGVAMNPVDHPHGGGNHQHVGHSTT 223
Query: 130 VKRGTSAGRKVGLIAA 83
V R ++ G+KVGLIAA
Sbjct: 224 VPRQSAPGQKVGLIAA 239
>SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit
L2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 318
Score = 60.5 bits (140), Expect = 1e-10
Identities = 38/120 (31%), Positives = 64/120 (53%)
Frame = -2
Query: 502 CDACGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPS 323
C +P GT++ + + +L R++G+ A +I D K V+L SG ++ +
Sbjct: 167 CFPLRLIPIGTVIHAIGVNPNQKAKLCRSAGSSARIIAF--DGKYAIVRLQSGEERKILD 224
Query: 322 SNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIG 143
++ +G+V+ + + KAGR+ ++ R P VRG AMNP +HPHGGG + IG
Sbjct: 225 TSFATIGVVSNIYWQHRQLGKAGRS--RWLGIR---PTVRGTAMNPCDHPHGGGGGKSIG 279
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 30.3 bits (65), Expect = 0.18
Identities = 17/57 (29%), Positives = 24/57 (42%)
Frame = +3
Query: 291 PATIPTMPLLLDGRTFLAPDGSFTLVRLASGLCPITVAKFPEARARRPLSPIFSSRL 461
PAT+P F P F +L SGL V+ +P+ + +P SRL
Sbjct: 246 PATVPITQAASTANAFQQPSNQFQTQKLPSGLDTRPVSSYPDELTQLESNPDSFSRL 302
>SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 147
Score = 28.3 bits (60), Expect = 0.73
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -2
Query: 280 IDKPILKAGRAYHKYKVKRNCWPYVRGVAMN 188
++KPI K+K K +CW +RG N
Sbjct: 68 VEKPIPVTKEELAKHKTKEDCWIAIRGKVYN 98
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 25.8 bits (54), Expect = 3.9
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
Frame = +2
Query: 74 GPASSNKTNFATSRCSSLDSGSLTYMLMVTTTVRMLY-RVHG-NTTYIWPAVTFDLVLVV 247
G ASS+ + A SS +GSL Y T V ++ R G ++T + + F
Sbjct: 439 GSASSSSASLAVPTVSSSTTGSLHYKTTTTVWVTEVFTRYLGDDSTPVTSSSIFSTATEA 498
Query: 248 CPSSFQ--NRFVNTSTSSNNTDHASV 319
+S Q + ++S++SN +SV
Sbjct: 499 TDTSVQTSSAIYDSSSTSNIQSSSSV 524
>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 25.8 bits (54), Expect = 3.9
Identities = 21/76 (27%), Positives = 36/76 (47%)
Frame = +2
Query: 278 NTSTSSNNTDHASVA*WQNLLGSRR*LYSCTLSIRIVSNHSGEVSRGTCQTTSITHFLFK 457
++S+SS+++ +S + + S R S T S R S+ S T+I+H+
Sbjct: 147 SSSSSSSSSSSSSKSSSSSSKSSSR-SSSRTTSHRTTSHKSSSYRPTVFPYTTISHYNIT 205
Query: 458 IAHNGTLRHSSTGITF 505
A NGT + + G F
Sbjct: 206 NATNGTYCNGTNGTNF 221
>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 719
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = -3
Query: 501 VMPVELCLRVPLC-AILKRKWVIEVV 427
+ P ELC ++ LC +LK K VI +
Sbjct: 92 IFPFELCEKIVLCLVLLKNKTVISPI 117
>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 625
Score = 24.6 bits (51), Expect = 9.0
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +3
Query: 339 LAPDGSFTLVRLASGLCPITVAKFPEARARRPLSPI 446
+AP + T+ ++A+GLC + RA PL PI
Sbjct: 116 IAPLSANTMAKMANGLCDNLLTSL--IRAWAPLKPI 149
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,262,655
Number of Sequences: 5004
Number of extensions: 47704
Number of successful extensions: 138
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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