Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS315B06f
         (418 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC24C6.03 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch...    23   2.3  
SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces po...    25   6.2  
SPBC27.08c |sua1|SPBC28F2.01c|sulfate adenylyltransferase |Schiz...    25   6.2  

>SPBC24C6.03 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 425

 Score = 22.6 bits (46), Expect(2) = 2.3
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 336 SXMNSDHYCPNCNAYIGTYT 395
           S  +SD  CPNCN  + + T
Sbjct: 244 SKTSSDISCPNCNDQLTSTT 263



 Score = 21.8 bits (44), Expect(2) = 2.3
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 204 TCPSCHAS 227
           TCPSCH S
Sbjct: 228 TCPSCHYS 235


>SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 427

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 185 TXCDHLDRSKLSSTQYERLKMNVFFIYFSNN 93
           T  D  +  + SS +Y  L++ + FIY  NN
Sbjct: 45  TLQDRYELLRKSSIRYTILQIGITFIYLQNN 75


>SPBC27.08c |sua1|SPBC28F2.01c|sulfate adenylyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 490

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +1

Query: 145 VEESFDRSRWSQXVQIQHRXPVH 213
           +   F R+ W++ V  Q R P+H
Sbjct: 177 LRSDFQRNNWNRVVAFQTRNPMH 199


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,146,152
Number of Sequences: 5004
Number of extensions: 15806
Number of successful extensions: 38
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)