Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS315B06f
         (418 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   4.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   5.6  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    21   5.6  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 9/22 (40%), Positives = 9/22 (40%)
 Frame = +3

Query: 342 MNSDHYCPNCNAYIGTYTR*FH 407
           M   HYC   N Y    T  FH
Sbjct: 6   MAGQHYCLRWNNYQSNMTSVFH 27


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +2

Query: 215  VPRVGHDQNHDQSQHEXSXHXXXPV 289
            VPR+  D + D+S    S     PV
Sbjct: 1341 VPRLAQDSSEDESYRGPSASGGRPV 1365


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +2

Query: 155 VLIDQDGHXR 184
           VL+DQDGH +
Sbjct: 116 VLLDQDGHIK 125


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,766
Number of Sequences: 438
Number of extensions: 1130
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10626762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)