Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS315B04f
         (450 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    25   0.50 
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    25   0.50 
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    23   1.2  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    23   1.2  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   8.2  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 24.6 bits (51), Expect = 0.50
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 355 KTTIAPLDRAKINFQTSQI 411
           KTT+AP++R K+  Q   I
Sbjct: 25  KTTVAPIERVKLLLQVQHI 43


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 24.6 bits (51), Expect = 0.50
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 355 KTTIAPLDRAKINFQTSQI 411
           KTT+AP++R K+  Q   I
Sbjct: 25  KTTVAPIERVKLLLQVQHI 43


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -3

Query: 262 LRVASCGPCAGLSSCST-GTRASLTAITLFHI 170
           LR+++ G C   S+CS+  T A ++  TLF I
Sbjct: 106 LRMSADGGCRNFSTCSSHPTAAFISYGTLFFI 137


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -3

Query: 262 LRVASCGPCAGLSSCST-GTRASLTAITLFHI 170
           LR+++ G C   S+CS+  T A ++  TLF I
Sbjct: 105 LRMSADGGCRNFSTCSSHPTAAFISYGTLFFI 136


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 7/16 (43%), Positives = 8/16 (50%)
 Frame = -2

Query: 215 HGDSCFSNSHHSISHH 168
           H D     SHH + HH
Sbjct: 64  HRDLPIYQSHHHLHHH 79


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,568
Number of Sequences: 438
Number of extensions: 1806
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11820384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)