Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS315B03f
         (513 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.12c |||conserved eukaryotic protein|Schizosaccharomyces...    27   1.6  
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    26   2.9  
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch...    26   3.8  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      25   8.8  

>SPBC2F12.12c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +2

Query: 251 FKFVISL-NFTVEHVKMGEFAHGIGATGVPSRGTCRRILAVKFYE 382
           +K+V  L N  +EH K+G+F+ G+        G  +RILA K +E
Sbjct: 156 WKYVKMLVNSRMEHNKVGQFSRGLKVVA----GEVQRILAPKSFE 196


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -1

Query: 369 TASIRRHVPREGTPVAPMPCANSPILTCSTVK 274
           T+S  R  P    P  P   ++SP+L+  TVK
Sbjct: 245 TSSSSRLYPSRPAPTPPASSSSSPLLSSQTVK 276


>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
           cytochrome c oxidase assembly protein Cox1101,
           mitochondrial ribosomal protein
           Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = +2

Query: 65  FVCTFEGNLKINCTNLLQVYGAQYSREPCNKRLHSIFHYII 187
           F C F      NC +  + Y  QYSR+  +    +  +Y++
Sbjct: 535 FPCIFTSFSCYNCISGTRKYSRQYSRDKFHYNQRTTIYYLV 575


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = +3

Query: 6  FFFFNVYKSSDSLFI-IAFVCLF 71
          FFF +++ S +SLF  + FVC F
Sbjct: 5  FFFASLFSSFESLFFRLFFVCSF 27


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,905,548
Number of Sequences: 5004
Number of extensions: 35089
Number of successful extensions: 78
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)