Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS315B03f
         (513 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   3.2  
DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              22   4.3  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    21   5.7  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    21   5.7  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +3

Query: 402 KSSQIQNRGKQNXSGQKTRARGRRSRG 482
           KSS I+N  +   +   T+ + RR  G
Sbjct: 219 KSSTIENESETESNASSTKTKMRRKSG 245


>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +3

Query: 108 ICYRCTGRNTHESLATNVCT 167
           IC  C G  THE L T + T
Sbjct: 10  ICV-CVGAMTHEELKTGIQT 28


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = -1

Query: 171 IECRRLLQGSREYCAPYTCNRFVQLIFK 88
           +EC+   QG+ E    + CN   + +F+
Sbjct: 217 VECKMEQQGNYENAVSHICNATNKQLFQ 244


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = -1

Query: 171 IECRRLLQGSREYCAPYTCNRFVQLIFK 88
           +EC+   QG+ E    + CN   + +F+
Sbjct: 217 VECKMEQQGNYENAVSHICNATNKQLFQ 244


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,510
Number of Sequences: 438
Number of extensions: 2892
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14232156
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)