Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS315B01f
(478 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 56 4e-09
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 44 2e-05
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 43 2e-05
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 37 0.001
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 33 0.030
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 27 1.5
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch... 25 4.5
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr... 25 5.9
SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation... 25 5.9
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 25 7.9
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 55.6 bits (128), Expect = 4e-09
Identities = 24/51 (47%), Positives = 36/51 (70%)
Frame = -3
Query: 392 GENTMGLDMQNGTVGDMKKLGVTESYVVKRQVLLSAAEAAEMILRVDNILK 240
G +TMGLDM G + DM+ G+ E+ +K+ V+ S +E A+++LRVD ILK
Sbjct: 468 GNDTMGLDMDEGEIADMRAKGILEALKLKQAVVSSGSEGAQLLLRVDTILK 518
>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
Cct3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 43.6 bits (98), Expect = 2e-05
Identities = 21/50 (42%), Positives = 34/50 (68%)
Frame = -3
Query: 392 GENTMGLDMQNGTVGDMKKLGVTESYVVKRQVLLSAAEAAEMILRVDNIL 243
G+++ G+D + G V DM + GV E VK Q + +A E+A ++LRVD+I+
Sbjct: 471 GQHSFGIDGETGRVVDMHEYGVWEPEAVKLQSIKTAIESACLLLRVDDIV 520
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 43.2 bits (97), Expect = 2e-05
Identities = 23/52 (44%), Positives = 29/52 (55%)
Frame = -3
Query: 395 RGENTMGLDMQNGTVGDMKKLGVTESYVVKRQVLLSAAEAAEMILRVDNILK 240
RG GLD+ NG + D K GV E + K + L SA EA ILR+D +K
Sbjct: 490 RGYKNYGLDLLNGVIRDNVKAGVLEPSMSKLKSLKSAVEACIAILRIDTSIK 541
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 37.1 bits (82), Expect = 0.001
Identities = 21/52 (40%), Positives = 29/52 (55%)
Frame = -3
Query: 395 RGENTMGLDMQNGTVGDMKKLGVTESYVVKRQVLLSAAEAAEMILRVDNILK 240
+GE G+DM + V + + V E VK +LSA EAA +IL VD +K
Sbjct: 475 KGEMWAGVDMDSEGVANNFEKFVWEPSTVKSNAILSATEAATLILSVDETIK 526
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 32.7 bits (71), Expect = 0.030
Identities = 17/47 (36%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Frame = -3
Query: 380 MGLD-MQNGTVGDMKKLGVTESYVVKRQVLLSAAEAAEMILRVDNIL 243
+G+D +Q G+ DM+K V + + K+Q LL A + M+L+V++I+
Sbjct: 491 LGIDCLQTGS-NDMRKQFVIDPLIGKKQQLLLATQLCRMVLKVNDII 536
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 27.1 bits (57), Expect = 1.5
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 251 YRHEESSRPLQPQTTGPVSLRHTTRS 328
+R++ SRP+ P +T P S +TRS
Sbjct: 383 FRYQRRSRPVSPCSTAPSSPTFSTRS 408
>SPAC29B12.10c |||OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 851
Score = 25.4 bits (53), Expect = 4.5
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +3
Query: 126 VAAIVWFTLMLLFYLG*WFS 185
V I W + +L+Y G WFS
Sbjct: 414 VVLIFWIVVPILYYKGVWFS 433
>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1225
Score = 25.0 bits (52), Expect = 5.9
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -1
Query: 232 PDAADPTVAHVKLFFTENHHPK*NSNIRVNHTIAATPT 119
P+ + T+ V++F E+ HP +N+ + AAT T
Sbjct: 627 PEGKNATLG-VQIFTEESEHPFGTANVSLQDLFAATKT 663
>SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation
specificity factor complex subunit
Pta1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 25.0 bits (52), Expect = 5.9
Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Frame = -1
Query: 262 FVSITF*RQHPDAADP---TVAHVKLFFTENHHPK*NSNI 152
F+S Q P DP T + V L HHP NSNI
Sbjct: 146 FISCVILTQVPGIRDPRLVTKSDVSLSKVPTHHPFINSNI 185
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 24.6 bits (51), Expect = 7.9
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +2
Query: 137 CMVYPNVTVLFGMMVFSEEKLNMGD 211
C+++ + LFG V S+E++N D
Sbjct: 355 CIIFERLLSLFGCKVTSDEEINEED 379
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,114,990
Number of Sequences: 5004
Number of extensions: 44550
Number of successful extensions: 105
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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