Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS315B01f
         (478 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   3.9  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   3.9  
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           21   5.1  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           21   5.1  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    21   5.1  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   6.8  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   6.8  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 230 WVLPSECYRHEESSRPL 280
           W L  +C+  E S RPL
Sbjct: 832 WRLMEQCWSGEPSKRPL 848


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 230 WVLPSECYRHEESSRPL 280
           W L  +C+  E S RPL
Sbjct: 870 WRLMEQCWSGEPSKRPL 886


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +1

Query: 340 FISPTVPFCISNP 378
           ++ P+ PFC  NP
Sbjct: 79  YLEPSPPFCEKNP 91


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +1

Query: 340 FISPTVPFCISNP 378
           ++ P+ PFC  NP
Sbjct: 80  YLEPSPPFCEKNP 92


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = -3

Query: 401 PPRGENTMGLDMQ 363
           PP+GEN + +D++
Sbjct: 49  PPQGENMLDMDLR 61


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.0 bits (42), Expect = 6.8
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -1

Query: 178 HHPK*NSNIRVNHTIAAT 125
           HHP    N +V+HT +++
Sbjct: 401 HHPNCKINRKVHHTTSSS 418


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.0 bits (42), Expect = 6.8
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 304 LFTTYDSVTPNFFIS 348
           LF+ YD+   NFFI+
Sbjct: 371 LFSKYDAKKRNFFIT 385


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,120
Number of Sequences: 438
Number of extensions: 3206
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12928545
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)